TissueCFM000523's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| intracellular protein transport | 0.002011942 | GO:0006886 |
| 1-phosphatidylinositol 4-kinase activity | 0.003190782 | GO:0004430 |
| phosphatidylinositol-mediated signaling | 0.007082717 | GO:0048015 |
| membrane coat | 0.015627901 | GO:0030117 |
| COPII vesicle coat | 0.015627901 | GO:0030127 |
| phosphatidylinositol phosphorylation | 0.016168745 | GO:0046854 |
| 3-phosphoinositide biosynthesis | 0.016519326 | plantCyc |
| D-myo-inositol (1,4,5)-trisphosphate biosynthesis | 0.016519326 | plantCyc |
| very long chain fatty acid biosynthesis I | 0.016519326 | plantCyc |
| ER to Golgi vesicle-mediated transport | 0.019683832 | GO:0006888 |
| Inositol phosphate metabolism | 0.023810781 | KEGG pathway |
| Lysosome | 0.023810781 | KEGG pathway |
| vesicle-mediated transport | 0.029000721 | GO:0016192 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002427 | - | - |
| CRO_T005031 | AT3G07100 (0) | ERMO2|ENDOPLASMIC RETICULUM MORPHOLOGY 2 |
| CRO_T010944 | AT1G49340 (2.00E-23) | ATPI4K ALPHA|Phosphatidylinositol 3- and 4-kinase family protein |
| CRO_T019325 | AT3G06470 (7.00E-75) | GNS1/SUR4 membrane protein family |
| CRO_T020159 | AT4G09830 (6.00E-45) | Uncharacterised conserved protein UCP009193 |
| CRO_T028174 | AT1G31730 (0) | Adaptin family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000041 | details | |
| TissueCFM000067 | details | |
| TissueCFM000150 | binding very long chain fatty acid biosynthesis I | details |
| TissueCFM000170 | ent-kaurene biosynthesis I terpene synthase activity Diterpenoid biosynthesis Zeatin biosynthesis | details |
| TissueCFM000246 | details | |
| TissueCFM000251 | 2-alkenal reductase [NAD(P)] activity kinase activity | details |
| TissueCFM000280 | ent-kaurene biosynthesis I Diterpenoid biosynthesis terpene synthase activity Transcription_related, Transcription factor: bHLH | details |
| TissueCFM000330 | low-affinity nitrate transmembrane transporter activity low-affinity nitrate transport oligopeptide transport | details |
| TissueCFM000333 | inositol monophosphate 1-phosphatase activity inositol phosphate dephosphorylation inositol metabolic process phosphatidylinositol phosphorylation magnesium ion binding signal transduction | details |
| TissueCFM000360 | transcriptional repressor complex autophagosome pre-autophagosomal structure piecemeal microautophagy of nucleus protein localization to pre-autophagosomal structure mitophagy late nucleophagy Cell cycle Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV Autophagy - animal Insulin signaling pathway MAPK signaling pathway | details |
| TissueCFM000376 | DNA integration very long chain fatty acid biosynthesis I | details |
| TissueCFM000386 | details | |
| TissueCFM000424 | regulation of transcription from RNA polymerase II promoter very long chain fatty acid biosynthesis I RNA polymerase II regulatory region sequence-specific DNA binding | details |
| TissueCFM000430 | details | |
| TissueCFM000502 | solute:proton antiporter activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: G2-like integral component of membrane anchored component of plasma membrane polysaccharide binding hydrolase activity, hydrolyzing O-glycosyl compounds hydrogen ion transmembrane transport | details |
| TissueCFM000540 | inositol monophosphate 1-phosphatase activity inositol phosphate dephosphorylation inositol metabolic process phosphatidylinositol phosphorylation magnesium ion binding signal transduction | details |
| TissueCFM000544 | intracellular part | details |
| TissueCFM000553 | very long chain fatty acid biosynthesis I | details |
| TissueCFM000604 | Ubiquitin_Proteasome_system, DUB: OTU | details |
| TissueCFM000629 | details | |
| TissueCFM000630 | cellulose biosynthesis cellulose synthase (UDP-forming) activity cellulose biosynthetic process cell wall organization mRNA surveillance pathway carbohydrate homeostasis negative regulation of protein kinase activity sulfate transport cellular response to sucrose stimulus embryonic root morphogenesis protein dephosphorylation L-arabinose metabolic process plant-type primary cell wall biogenesis calcium ion transport osmosensory signaling pathway | details |
| TissueCFM000695 | Hedgehog signaling pathway Protein_kinases_phosphatases, PPC:1.12.1: Leucine Rich Repeat Kinase X very long chain fatty acid biosynthesis I ABC transporters integral component of mitochondrial inner membrane mitochondrial inner membrane presequence translocase complex G-protein coupled receptor signaling pathway protein import into chloroplast stroma protein import into mitochondrial matrix chloroplast plasma membrane G-protein beta/gamma-subunit complex binding protein channel activity | details |
| TissueCFM000854 | details | |
| TissueCFM000866 | very long chain fatty acid biosynthesis I protein ubiquitination involved in ubiquitin-dependent protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process protein polyubiquitination | details |
| TissueCFM000905 | very long chain fatty acid biosynthesis I | details |
| TissueCFM000923 | Transcription_related, Transcription factor: CAMTA Cell cycle Viral carcinogenesis lateral root formation inflorescence morphogenesis chromosome organization response to fungus photomorphogenesis auxin polar transport unidimensional cell growth response to auxin | details |
| TissueCFM000946 | 2-alkenal reductase [NAD(P)] activity kinase activity | details |
| TissueCFM001027 | FoxO signaling pathway Protein_kinases_phosphatases, PPC:4.1.1: MAP3K Ubiquitin_Proteasome_system, DUB: USP 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis Inositol phosphate metabolism phosphatidylinositol-mediated signaling calcium ion transport chloride transport voltage-gated chloride channel activity DNA topoisomerase type I activity 1-phosphatidylinositol 4-kinase activity thiol-dependent ubiquitinyl hydrolase activity motor activity phosphatidylinositol phosphorylation protein deubiquitination activation of MAPKK activity regulation of anion transmembrane transport MAP kinase kinase kinase activity MAPK cascade ion transmembrane transport cell division myosin complex ubiquitin-dependent protein catabolic process actin binding | details |
| TissueCFM001086 | ABC transporters auxin influx transmembrane transporter activity taurine-transporting ATPase activity root hair elongation gravitropism amine transport basipetal auxin transport auxin efflux auxin influx xenobiotic transport auxin efflux transmembrane transporter activity xenobiotic-transporting ATPase activity Transcription_related, Transcription factor: MYB | details |
| TissueCFM001099 | L-phenylalanine catabolic process cinnamic acid biosynthetic process Phenylalanine metabolism Protein_kinases_phosphatases, PPC:1.1.3: Putative protein kinase/Putative receptor-like protein kinase trans-cinnamoyl-CoA biosynthesis phenylpropanoid biosynthesis, initial reactions adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 phenylalanine ammonia-lyase activity protein kinase activity ammonium transmembrane transporter activity ammonium transmembrane transport NF-kappa B signaling pathway suberin monomers biosynthesis very long chain fatty acid biosynthesis I | details |
| TissueCFM001154 | details | |
| TissueCFM001230 | 2-alkenal reductase [NAD(P)] activity kinase activity | details |
| TissueCFM001320 | very long chain fatty acid biosynthesis I | details |
| TissueCFM001357 | Fc gamma R-mediated phagocytosis | details |
| TissueCFM001427 | vesicle-mediated transport intracellular protein transport transcriptional repressor complex Golgi apparatus part intracellular transport Cell cycle vacuolar transport Lysosome Transcription_related, Transcription factor: MYB-related very long chain fatty acid biosynthesis I membrane coat | details |
| TissueCFM001447 | vesicle-mediated transport protein transporter activity intracellular protein transport Ubiquitin_Proteasome_system, E3 adaptor: Cullin intracellular transport vacuolar transport MAPK signaling pathway - fly protein import into nucleus nuclear envelope cullin-RING ubiquitin ligase complex membrane coat clathrin adaptor complex Golgi apparatus part cytosol protein ubiquitination involved in ubiquitin-dependent protein catabolic process Lysosome Ran GTPase binding ubiquitin protein ligase binding signal transduction Endocytosis | details |
| TissueCFM001448 | Protein processing in endoplasmic reticulum internal protein amino acid acetylation N-terminal peptidyl-glutamic acid acetylation N-terminal peptidyl-serine acetylation peptide-serine-N-acetyltransferase activity peptide-glutamate-N-acetyltransferase activity NatA complex Golgi apparatus part Transcription_related, Transcription regulator: GNAT Ubiquitin_Proteasome_system, E3 adaptor: Cullin intracellular transport cytosolic ribosome cullin-RING ubiquitin ligase complex COPII vesicle coat vacuolar transport mRNA surveillance pathway ER to Golgi vesicle-mediated transport protein ubiquitination involved in ubiquitin-dependent protein catabolic process vesicle-mediated transport | details |
| TissueCFM001449 | phosphatidylethanolamine biosynthesis I FoxO signaling pathway Protein digestion and absorption Ubiquitin_Proteasome_system, DUB: ULP Ubiquitin_Proteasome_system, DUB: USP Ubiquitin_Proteasome_system, E3: HECT very long chain fatty acid biosynthesis I Glycerophospholipid metabolism | details |
| TissueCFM001507 | glucose-6-phosphate dehydrogenase activity chlorophyllase activity folic acid-containing compound metabolic process pentose-phosphate shunt glucose metabolic process chlorophyll catabolic process oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor fatty acid elongation -- saturated pentose phosphate pathway (oxidative branch) I octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) stearate biosynthesis II (bacteria and plants) NADP binding response to stimulus palmitate biosynthesis II (bacteria and plants) Ubiquitin_Proteasome_system, E3 adaptor: F-box Porphyrin and chlorophyll metabolism oxidation-reduction process | details |
| TissueCFM001605 | Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase calcium-dependent protein serine/threonine kinase activity ATP binding calmodulin-dependent protein kinase activity protein autophosphorylation peptidyl-serine phosphorylation abscisic acid-activated signaling pathway | details |
| TissueCFM001622 | 1,3-β-D-glucan biosynthesis Transcription_related, Transcription factor: CAMTA extrinsic component of endoplasmic reticulum membrane 1,3-beta-D-glucan synthase complex (1->3)-beta-D-glucan biosynthetic process protein targeting to vacuole Transcription_related, Transcription factor: C3H ER to Golgi vesicle-mediated transport 1,3-beta-D-glucan synthase activity | details |
| TissueCFM001732 | Transcription_related, Transcription factor: CAMTA Transcription_related, Transcription factor: SBP Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase mRNA surveillance pathway protein phosphatase type 2A complex regulation of protein phosphatase type 2A activity abscisic acid-activated signaling pathway protein autophosphorylation peptidyl-serine phosphorylation calcium-dependent protein serine/threonine kinase activity protein phosphatase type 2A regulator activity calmodulin-dependent protein kinase activity intracellular signal transduction | details |
Expression profiles
 Show details about module gene expression profiling |