TissueCFM000837's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| sesaminol glucoside biosynthesis | 0.005308548 | plantCyc |
| Transcription_related, Transcription regulator: mTERF | 0.029197014 | TF family |
| transferase activity, transferring hexosyl groups | 0.039367664 | GO:0016758 |
| coenzyme binding | 0.039367664 | GO:0050662 |
| Plant hormone signal transduction | 0.042841753 | KEGG pathway |
| RNA transport | 0.042841753 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005535 | AT4G24220 (2.00E-85) | VEP1|VEIN PATTERNING 1 |
| CRO_T007772 | AT3G19350 (3.00E-16) | MPC|maternally expressed pab C-terminal |
| CRO_T012318 | AT3G21760 (5.00E-124) | HYR1|HYPOSTATIN RESISTANCE 1 |
| CRO_T015811 | AT4G24210 (1.00E-28) | SLY1|SLEEPY1 |
| CRO_T021673 | AT3G58800 (4.00E-101) | unknown protein |
| CRO_T022525 | AT5G07900 (1.00E-68) | Mitochondrial transcription termination factor family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000390 | Ubiquitin_Proteasome_system, E3 adaptor: F-box geranyl acetate biosynthesis ajmaline and sarpagine biosynthesis volatile benzenoid biosynthesis I (ester formation) DNA topological change Ubiquitin_Proteasome_system, E2: UBC vesicle fusion exocytosis DNA topoisomerase type II (ATP-hydrolyzing) activity DNA topoisomerase type I activity chromosome SNARE complex RNA transport Ubiquitin mediated proteolysis | details |
| TissueCFM000391 | Ubiquitin_Proteasome_system, E3 adaptor: F-box RNA splicing DNA-templated transcription, initiation single organism reproductive process single-multicellular organism process RNA transport | details |
| TissueCFM000801 | RNA transport Autophagy - animal MAPK signaling pathway autophagosome assembly DNA topological change Transcription_related, Transcription factor: NF-YC Transcription_related, Transcription factor: Trihelix pre-autophagosomal structure | details |
| TissueCFM000836 | alanyl-tRNA aminoacylation regulation of protein kinase activity regulation of translational fidelity Transcription_related, Transcription factor: NF-YC Ser-tRNA(Ala) hydrolase activity ajmaline and sarpagine biosynthesis alanine-tRNA ligase activity triacylglycerol degradation protein kinase regulator activity tRNA binding RNA transport | details |
| TissueCFM001148 | Ubiquitin_Proteasome_system, E3 adaptor: F-box photosystem photosynthesis, light reaction geranyl acetate biosynthesis Transcription_related, Transcription regulator: mTERF ajmaline and sarpagine biosynthesis volatile benzenoid biosynthesis I (ester formation) RNA transport | details |
| TissueCFM001224 | protein demethylation purine nucleobase catabolic process ureide catabolic process allantoin catabolic process allantoin degradation to glyoxylate II allantoin degradation to ureidoglycolate II (ammonia producing) urate degradation to allantoin I protein homooligomerization molybdenum cofactor biosynthesis ureidoglycine aminohydrolase activity formation of glycosidic bonds, GlycosylTransferases: GTnc carboxylic ester hydrolase activity | details |
| TissueCFM001364 | 4-hydroxyphenylpyruvate biosynthesis superpathway of plastoquinol biosynthesis rosmarinic acid biosynthesis I L-phenylalanine biosynthesis III (cytosolic, plants) 4-hydroxybenzoate biosynthesis I (eukaryotes) L-tyrosine:2-oxoglutarate aminotransferase activity DNA topoisomerase type II (ATP-hydrolyzing) activity DNA topoisomerase type I activity cellular amino acid metabolic process DNA topological change biosynthetic process cytosol chromosome | details |
| TissueCFM001368 | transferase activity, transferring hexosyl groups formation of glycosidic bonds, GlycosylTransferases: GTnc translational termination translation release factor activity, codon specific protein N-glycosylation (eukaryotic, high mannose) sesaminol glucoside biosynthesis triacylglycerol degradation | details |
| TissueCFM001383 | actin filament polymerization Group II intron splicing N-terminal peptidyl-glycine N-myristoylation regulation of vesicle targeting, to, from or within Golgi Arp2/3 complex-mediated actin nucleation DNA topological change translational termination cis-Golgi network cytoplasm Golgi medial cisterna Arp2/3 protein complex cytochrome complex assembly intra-Golgi vesicle-mediated transport ajmaline and sarpagine biosynthesis Flavonoid biosynthesis flavonoid biosynthesis (in equisetum) leucodelphinidin biosynthesis pinobanksin biosynthesis sesaminol glucoside biosynthesis | details |
| TissueCFM001385 | RNA transport actin filament polymerization Arp2/3 complex-mediated actin nucleation translational termination regulation of vesicle targeting, to, from or within Golgi intra-Golgi vesicle-mediated transport cis-Golgi network Arp2/3 protein complex Golgi medial cisterna vesicle fusion ER to Golgi vesicle-mediated transport protein transport SNARE interactions in vesicular transport SNARE binding actin binding translation release factor activity, codon specific SNAP receptor activity cell part Endocytosis mRNA surveillance pathway | details |
| TissueCFM001537 | 4-hydroxyphenylpyruvate biosynthesis superpathway of plastoquinol biosynthesis GPI-anchor transamidase complex rosmarinic acid biosynthesis I L-tyrosine:2-oxoglutarate aminotransferase activity GPI-anchor transamidase activity L-phenylalanine biosynthesis III (cytosolic, plants) cytosol attachment of GPI anchor to protein 4-hydroxybenzoate biosynthesis I (eukaryotes) cellular amino acid metabolic process biosynthetic process Glycosylphosphatidylinositol(GPI)-anchor biosynthesis Biosynthesis of amino acids RNA transport | details |
| TissueCFM001792 | glutathione biosynthesis glutathione biosynthetic process DNA topological change glutathione synthase activity glutathione binding DNA topoisomerase type I activity DNA topoisomerase type II (ATP-hydrolyzing) activity chromosome Cysteine and methionine metabolism RNA transport | details |
Expression profiles
 Show details about module gene expression profiling |