TissueCFM001385's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| RNA transport | 0.004716384 | KEGG pathway |
| actin filament polymerization | 0.010280159 | GO:0030041 |
| Arp2/3 complex-mediated actin nucleation | 0.012839569 | GO:0034314 |
| translational termination | 0.012839569 | GO:0006415 |
| regulation of vesicle targeting, to, from or within Golgi | 0.012839569 | GO:0048209 |
| intra-Golgi vesicle-mediated transport | 0.020522075 | GO:0006891 |
| cis-Golgi network | 0.023061483 | GO:0005801 |
| Arp2/3 protein complex | 0.023061483 | GO:0005885 |
| Golgi medial cisterna | 0.023061483 | GO:0005797 |
| vesicle fusion | 0.027328833 | GO:0006906 |
| ER to Golgi vesicle-mediated transport | 0.028528215 | GO:0006888 |
| protein transport | 0.031966433 | GO:0015031 |
| SNARE interactions in vesicular transport | 0.037291399 | KEGG pathway |
| SNARE binding | 0.041674718 | GO:0000149 |
| actin binding | 0.041674718 | GO:0003779 |
| translation release factor activity, codon specific | 0.041674718 | GO:0016149 |
| SNAP receptor activity | 0.041674718 | GO:0005484 |
| cell part | 0.046617472 | GO:0044464 |
| Endocytosis | 0.04875425 | KEGG pathway |
| mRNA surveillance pathway | 0.04875425 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003188 | AT1G12920 (0) | ERF1-2|eukaryotic release factor 1-2 |
| CRO_T007772 | AT3G19350 (3.00E-16) | MPC|maternally expressed pab C-terminal |
| CRO_T007901 | AT1G15880 (3.00E-20) | GOS11|golgi snare 11 |
| CRO_T012875 | AT1G65020 (2.00E-33) | unknown protein |
| CRO_T013162 | AT4G17520 (2.00E-38) | Hyaluronan / mRNA binding family |
| CRO_T017777 | AT5G38895 (2.00E-18) | RING/U-box superfamily protein |
| CRO_T018757 | - | - |
| CRO_T020799 | AT4G14147 (4.00E-63) | ARPC4|protein binding |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000390 | Ubiquitin_Proteasome_system, E3 adaptor: F-box geranyl acetate biosynthesis ajmaline and sarpagine biosynthesis volatile benzenoid biosynthesis I (ester formation) DNA topological change Ubiquitin_Proteasome_system, E2: UBC vesicle fusion exocytosis DNA topoisomerase type II (ATP-hydrolyzing) activity DNA topoisomerase type I activity chromosome SNARE complex RNA transport Ubiquitin mediated proteolysis | details |
| TissueCFM000391 | Ubiquitin_Proteasome_system, E3 adaptor: F-box RNA splicing DNA-templated transcription, initiation single organism reproductive process single-multicellular organism process RNA transport | details |
| TissueCFM000554 | molybdenum cofactor biosynthesis Transcriptional misregulation in cancers nucleic acid binding nucleotide binding carbohydrate metabolic process | details |
| TissueCFM000674 | cortical microtubule organization chaperone-mediated protein complex assembly prefoldin complex mRNA surveillance pathway translational initiation chaperone binding protein folding | details |
| TissueCFM000675 | nucleic acid binding histidine phosphotransfer kinase activity nucleotide binding protein histidine kinase binding Transcriptional misregulation in cancers cytokinin-activated signaling pathway phosphorelay signal transduction system mRNA surveillance pathway | details |
| TissueCFM000784 | MAPK signaling pathway Ubiquitin_Proteasome_system, DUB: USP thiol-dependent ubiquitinyl hydrolase activity protein deubiquitination ubiquitin-dependent protein catabolic process small GTPase mediated signal transduction | details |
| TissueCFM000801 | RNA transport Autophagy - animal MAPK signaling pathway autophagosome assembly DNA topological change Transcription_related, Transcription factor: NF-YC Transcription_related, Transcription factor: Trihelix pre-autophagosomal structure | details |
| TissueCFM000836 | alanyl-tRNA aminoacylation regulation of protein kinase activity regulation of translational fidelity Transcription_related, Transcription factor: NF-YC Ser-tRNA(Ala) hydrolase activity ajmaline and sarpagine biosynthesis alanine-tRNA ligase activity triacylglycerol degradation protein kinase regulator activity tRNA binding RNA transport | details |
| TissueCFM000837 | sesaminol glucoside biosynthesis Transcription_related, Transcription regulator: mTERF transferase activity, transferring hexosyl groups coenzyme binding Plant hormone signal transduction RNA transport | details |
| TissueCFM000991 | nonaprenyl diphosphate biosynthesis II pyridoxal 5'-phosphate salvage I endoribonuclease activity pyridoxal kinase activity pyridoxal 5'-phosphate salvage dimethylallyltranstransferase activity RNA metabolic process isoprenoid biosynthetic process Vitamin B6 metabolism Terpenoid backbone biosynthesis Ubiquitin_Proteasome_system, E3 adaptor: DWD RNA transport | details |
| TissueCFM001018 | vesicle fusion vesicle docking SNARE binding SNAP receptor activity intracellular protein transport Protein processing in endoplasmic reticulum | details |
| TissueCFM001101 | Transcription_related, Transcription factor: TCP pyridoxal kinase activity syntaxin binding fatty-acyl-CoA synthase activity soluble NSF attachment protein activity DNA replication origin binding nickel cation binding actin filament polymerization pyridoxal 5'-phosphate salvage pyridoxal 5'-phosphate salvage I membrane fusion Arp2/3 complex-mediated actin nucleation jasmonic acid biosynthetic process regulation of leaf development Vitamin B6 metabolism DNA replication initiation nuclear origin of replication recognition complex nitrogen compound metabolic process Arp2/3 protein complex Cell cycle jasmonic acid biosynthesis triacylglycerol degradation actin binding | details |
| TissueCFM001148 | Ubiquitin_Proteasome_system, E3 adaptor: F-box photosystem photosynthesis, light reaction geranyl acetate biosynthesis Transcription_related, Transcription regulator: mTERF ajmaline and sarpagine biosynthesis volatile benzenoid biosynthesis I (ester formation) RNA transport | details |
| TissueCFM001151 | transcription export complex 2 SAGA complex DUBm complex vesicle organization endosome to lysosome transport positive regulation of proteasomal protein catabolic process transcription elongation from RNA polymerase II promoter Golgi to vacuole transport mRNA export from nucleus positive regulation of RNA polymerase II transcriptional preinitiation complex assembly histone deubiquitination positive gravitropism auxin homeostasis nuclear proteasome complex multivesicular body late endosome membrane retromer complex cytosolic proteasome complex Transcription_related, Transcription factor: NF-YC proteasome regulatory particle, base subcomplex ER-associated ubiquitin-dependent protein catabolic process protein targeting to vacuole Endocytosis Ubiquitin_Proteasome_system, E2: UBC extrinsic component of membrane nuclear pore proteasome-activating ATPase activity transcription coactivator activity TBP-class protein binding phosphatidylinositol binding root development positive regulation of transcription, DNA-templated Proteasome Ubiquitin mediated proteolysis protein transport | details |
| TissueCFM001364 | 4-hydroxyphenylpyruvate biosynthesis superpathway of plastoquinol biosynthesis rosmarinic acid biosynthesis I L-phenylalanine biosynthesis III (cytosolic, plants) 4-hydroxybenzoate biosynthesis I (eukaryotes) L-tyrosine:2-oxoglutarate aminotransferase activity DNA topoisomerase type II (ATP-hydrolyzing) activity DNA topoisomerase type I activity cellular amino acid metabolic process DNA topological change biosynthetic process cytosol chromosome | details |
| TissueCFM001368 | transferase activity, transferring hexosyl groups formation of glycosidic bonds, GlycosylTransferases: GTnc translational termination translation release factor activity, codon specific protein N-glycosylation (eukaryotic, high mannose) sesaminol glucoside biosynthesis triacylglycerol degradation | details |
| TissueCFM001383 | actin filament polymerization Group II intron splicing N-terminal peptidyl-glycine N-myristoylation regulation of vesicle targeting, to, from or within Golgi Arp2/3 complex-mediated actin nucleation DNA topological change translational termination cis-Golgi network cytoplasm Golgi medial cisterna Arp2/3 protein complex cytochrome complex assembly intra-Golgi vesicle-mediated transport ajmaline and sarpagine biosynthesis Flavonoid biosynthesis flavonoid biosynthesis (in equisetum) leucodelphinidin biosynthesis pinobanksin biosynthesis sesaminol glucoside biosynthesis | details |
| TissueCFM001384 | Golgi medial cisterna cis-Golgi network MAPK signaling pathway SNARE interactions in vesicular transport regulation of vesicle targeting, to, from or within Golgi intra-Golgi vesicle-mediated transport protein transport translational initiation ER to Golgi vesicle-mediated transport vesicle fusion SNARE binding SNAP receptor activity SNARE complex Ubiquitin_Proteasome_system, E3 adaptor: F-box translation initiation factor activity Golgi membrane | details |
| TissueCFM001424 | Ubiquitin mediated proteolysis Transcription_related, Transcription factor: NF-YC Ubiquitin_Proteasome_system, E2: UBC | details |
| TissueCFM001458 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity cytoskeleton organization gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt microtubule binding | details |
| TissueCFM001537 | 4-hydroxyphenylpyruvate biosynthesis superpathway of plastoquinol biosynthesis GPI-anchor transamidase complex rosmarinic acid biosynthesis I L-tyrosine:2-oxoglutarate aminotransferase activity GPI-anchor transamidase activity L-phenylalanine biosynthesis III (cytosolic, plants) cytosol attachment of GPI anchor to protein 4-hydroxybenzoate biosynthesis I (eukaryotes) cellular amino acid metabolic process biosynthetic process Glycosylphosphatidylinositol(GPI)-anchor biosynthesis Biosynthesis of amino acids RNA transport | details |
| TissueCFM001792 | glutathione biosynthesis glutathione biosynthetic process DNA topological change glutathione synthase activity glutathione binding DNA topoisomerase type I activity DNA topoisomerase type II (ATP-hydrolyzing) activity chromosome Cysteine and methionine metabolism RNA transport | details |
Expression profiles
 Show details about module gene expression profiling |