TissueCFM001368's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| transferase activity, transferring hexosyl groups | 0.000365604 | GO:0016758 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.008122396 | cazy family |
| translational termination | 0.008854906 | GO:0006415 |
| translation release factor activity, codon specific | 0.01229848 | GO:0016149 |
| protein N-glycosylation (eukaryotic, high mannose) | 0.024286336 | plantCyc |
| sesaminol glucoside biosynthesis | 0.024286336 | plantCyc |
| triacylglycerol degradation | 0.039173445 | plantCyc |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003188 | AT1G12920 (0) | ERF1-2|eukaryotic release factor 1-2 |
| CRO_T005666 | AT1G08310 (6.00E-97) | alpha/beta-Hydrolases superfamily protein |
| CRO_T006473 | AT1G07250 (6.00E-106) | UGT71C4|UDP-glucosyl transferase 71C4 |
| CRO_T007772 | AT3G19350 (3.00E-16) | MPC|maternally expressed pab C-terminal |
| CRO_T009548 | AT2G17080 (8.00E-39) | Arabidopsis protein of unknown function (DUF241) |
| CRO_T013162 | AT4G17520 (2.00E-38) | Hyaluronan / mRNA binding family |
| CRO_T015186 | AT5G38460 (6.00E-62) | ALG6, ALG8 glycosyltransferase family |
| CRO_T020895 | AT5G53620 (1.00E-146) | unknown protein |
| CRO_T022045 | AT4G12560 (3.00E-28) | CPR1|CONSTITUTIVE EXPRESSER OF PR GENES 1; CPR30|CONSTITUTIVE EXPRESSER OF PR GENES 30 |
| CRO_T029653 | AT1G76980 (1.00E-23) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000390 | Ubiquitin_Proteasome_system, E3 adaptor: F-box geranyl acetate biosynthesis ajmaline and sarpagine biosynthesis volatile benzenoid biosynthesis I (ester formation) DNA topological change Ubiquitin_Proteasome_system, E2: UBC vesicle fusion exocytosis DNA topoisomerase type II (ATP-hydrolyzing) activity DNA topoisomerase type I activity chromosome SNARE complex RNA transport Ubiquitin mediated proteolysis | details |
| TissueCFM000391 | Ubiquitin_Proteasome_system, E3 adaptor: F-box RNA splicing DNA-templated transcription, initiation single organism reproductive process single-multicellular organism process RNA transport | details |
| TissueCFM000554 | molybdenum cofactor biosynthesis Transcriptional misregulation in cancers nucleic acid binding nucleotide binding carbohydrate metabolic process | details |
| TissueCFM000674 | cortical microtubule organization chaperone-mediated protein complex assembly prefoldin complex mRNA surveillance pathway translational initiation chaperone binding protein folding | details |
| TissueCFM000675 | nucleic acid binding histidine phosphotransfer kinase activity nucleotide binding protein histidine kinase binding Transcriptional misregulation in cancers cytokinin-activated signaling pathway phosphorelay signal transduction system mRNA surveillance pathway | details |
| TissueCFM000784 | MAPK signaling pathway Ubiquitin_Proteasome_system, DUB: USP thiol-dependent ubiquitinyl hydrolase activity protein deubiquitination ubiquitin-dependent protein catabolic process small GTPase mediated signal transduction | details |
| TissueCFM000801 | RNA transport Autophagy - animal MAPK signaling pathway autophagosome assembly DNA topological change Transcription_related, Transcription factor: NF-YC Transcription_related, Transcription factor: Trihelix pre-autophagosomal structure | details |
| TissueCFM000836 | alanyl-tRNA aminoacylation regulation of protein kinase activity regulation of translational fidelity Transcription_related, Transcription factor: NF-YC Ser-tRNA(Ala) hydrolase activity ajmaline and sarpagine biosynthesis alanine-tRNA ligase activity triacylglycerol degradation protein kinase regulator activity tRNA binding RNA transport | details |
| TissueCFM000837 | sesaminol glucoside biosynthesis Transcription_related, Transcription regulator: mTERF transferase activity, transferring hexosyl groups coenzyme binding Plant hormone signal transduction RNA transport | details |
| TissueCFM001017 | endopeptidase activity anaphase-promoting complex binding ubiquitin-protein transferase activator activity SNAP receptor activity SNARE binding Ubiquitin mediated proteolysis regulation of catalytic activity vesicle fusion vesicle docking Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TissueCFM001018 | vesicle fusion vesicle docking SNARE binding SNAP receptor activity intracellular protein transport Protein processing in endoplasmic reticulum | details |
| TissueCFM001101 | Transcription_related, Transcription factor: TCP pyridoxal kinase activity syntaxin binding fatty-acyl-CoA synthase activity soluble NSF attachment protein activity DNA replication origin binding nickel cation binding actin filament polymerization pyridoxal 5'-phosphate salvage pyridoxal 5'-phosphate salvage I membrane fusion Arp2/3 complex-mediated actin nucleation jasmonic acid biosynthetic process regulation of leaf development Vitamin B6 metabolism DNA replication initiation nuclear origin of replication recognition complex nitrogen compound metabolic process Arp2/3 protein complex Cell cycle jasmonic acid biosynthesis triacylglycerol degradation actin binding | details |
| TissueCFM001148 | Ubiquitin_Proteasome_system, E3 adaptor: F-box photosystem photosynthesis, light reaction geranyl acetate biosynthesis Transcription_related, Transcription regulator: mTERF ajmaline and sarpagine biosynthesis volatile benzenoid biosynthesis I (ester formation) RNA transport | details |
| TissueCFM001205 | Ubiquitin_Proteasome_system, DUB: UCH thiol-dependent ubiquitin-specific protease activity shoot system morphogenesis Transcription_related, Transcription factor: HSF protein deubiquitination leaf development ubiquitin-dependent protein catabolic process | details |
| TissueCFM001302 | Sulfur relay system molybdenum cofactor biosynthesis Transcription_related, Transcription regulator: Jumonji early endosome membrane molybdopterin synthase complex molybdenum incorporation into molybdenum-molybdopterin complex negative regulation of histone acetylation histone H3-K9 demethylation response to brassinosteroid molybdopterin synthase activity vacuole organization Mo-molybdopterin cofactor biosynthetic process protein targeting to vacuole leaf development vegetative to reproductive phase transition of meristem unidimensional cell growth vesicle fusion auxin-activated signaling pathway exocytosis ER to Golgi vesicle-mediated transport SNAP receptor activity SNARE binding SNARE complex | details |
| TissueCFM001364 | 4-hydroxyphenylpyruvate biosynthesis superpathway of plastoquinol biosynthesis rosmarinic acid biosynthesis I L-phenylalanine biosynthesis III (cytosolic, plants) 4-hydroxybenzoate biosynthesis I (eukaryotes) L-tyrosine:2-oxoglutarate aminotransferase activity DNA topoisomerase type II (ATP-hydrolyzing) activity DNA topoisomerase type I activity cellular amino acid metabolic process DNA topological change biosynthetic process cytosol chromosome | details |
| TissueCFM001383 | actin filament polymerization Group II intron splicing N-terminal peptidyl-glycine N-myristoylation regulation of vesicle targeting, to, from or within Golgi Arp2/3 complex-mediated actin nucleation DNA topological change translational termination cis-Golgi network cytoplasm Golgi medial cisterna Arp2/3 protein complex cytochrome complex assembly intra-Golgi vesicle-mediated transport ajmaline and sarpagine biosynthesis Flavonoid biosynthesis flavonoid biosynthesis (in equisetum) leucodelphinidin biosynthesis pinobanksin biosynthesis sesaminol glucoside biosynthesis | details |
| TissueCFM001384 | Golgi medial cisterna cis-Golgi network MAPK signaling pathway SNARE interactions in vesicular transport regulation of vesicle targeting, to, from or within Golgi intra-Golgi vesicle-mediated transport protein transport translational initiation ER to Golgi vesicle-mediated transport vesicle fusion SNARE binding SNAP receptor activity SNARE complex Ubiquitin_Proteasome_system, E3 adaptor: F-box translation initiation factor activity Golgi membrane | details |
| TissueCFM001385 | RNA transport actin filament polymerization Arp2/3 complex-mediated actin nucleation translational termination regulation of vesicle targeting, to, from or within Golgi intra-Golgi vesicle-mediated transport cis-Golgi network Arp2/3 protein complex Golgi medial cisterna vesicle fusion ER to Golgi vesicle-mediated transport protein transport SNARE interactions in vesicular transport SNARE binding actin binding translation release factor activity, codon specific SNAP receptor activity cell part Endocytosis mRNA surveillance pathway | details |
| TissueCFM001434 | uracil degradation I (reductive) beta-ureidopropionase activity uracil catabolic process CIA complex iron-sulfur cluster assembly Pyrimidine metabolism Plant-pathogen interaction transferase activity, transferring acyl groups Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TissueCFM001458 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity cytoskeleton organization gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt microtubule binding | details |
| TissueCFM001537 | 4-hydroxyphenylpyruvate biosynthesis superpathway of plastoquinol biosynthesis GPI-anchor transamidase complex rosmarinic acid biosynthesis I L-tyrosine:2-oxoglutarate aminotransferase activity GPI-anchor transamidase activity L-phenylalanine biosynthesis III (cytosolic, plants) cytosol attachment of GPI anchor to protein 4-hydroxybenzoate biosynthesis I (eukaryotes) cellular amino acid metabolic process biosynthetic process Glycosylphosphatidylinositol(GPI)-anchor biosynthesis Biosynthesis of amino acids RNA transport | details |
| TissueCFM001692 | tissue development regulation of response to stimulus anatomical structure morphogenesis cellular response to stimulus plant organ development response to organic substance response to bacterium Transcription_related, Transcription factor: MYB-related Ubiquitin_Proteasome_system, DUB: USP response to osmotic stress defense response to other organism cellular protein metabolic process maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ABC transporters | details |
| TissueCFM001718 | ESCRT I complex transcription factor TFIID complex C-5 methylation of cytosine protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway RNA polymerase II transcriptional preinitiation complex assembly histone acetyltransferase binding DNA (cytosine-5-)-methyltransferase activity protein complex binding transcription factor binding transcription coactivator activity transcription regulatory region DNA binding Cellular senescence regulation of transcription from RNA polymerase II promoter chromatin binding Basal transcription factors Cysteine and methionine metabolism Endocytosis | details |
| TissueCFM001733 | leaf development Ubiquitin_Proteasome_system, DUB: UCH shoot system morphogenesis histone H3-K9 demethylation negative regulation of histone acetylation response to brassinosteroid Transcription_related, Transcription regulator: Jumonji vesicle docking protein deubiquitination vegetative to reproductive phase transition of meristem unidimensional cell growth cellular metabolic process organic substance metabolic process vesicle fusion thiol-dependent ubiquitin-specific protease activity | details |
| TissueCFM001792 | glutathione biosynthesis glutathione biosynthetic process DNA topological change glutathione synthase activity glutathione binding DNA topoisomerase type I activity DNA topoisomerase type II (ATP-hydrolyzing) activity chromosome Cysteine and methionine metabolism RNA transport | details |
| TissueCFM001826 | Transcription_related, Transcription regulator: Jumonji response to stress single-organism metabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
Expression profiles
 Show details about module gene expression profiling |