TissueCFM001792's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| glutathione biosynthesis | 0.000531915 | plantCyc |
| glutathione biosynthetic process | 0.001595745 | GO:0006750 |
| DNA topological change | 0.002923803 | GO:0006265 |
| glutathione synthase activity | 0.009903864 | GO:0004363 |
| glutathione binding | 0.009903864 | GO:0043295 |
| DNA topoisomerase type I activity | 0.013200274 | GO:0003917 |
| DNA topoisomerase type II (ATP-hydrolyzing) activity | 0.013200274 | GO:0003918 |
| chromosome | 0.014336257 | GO:0005694 |
| Cysteine and methionine metabolism | 0.022276143 | KEGG pathway |
| RNA transport | 0.040243127 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007121 | AT1G70650 (4.00E-105) | Ran BP2/NZF zinc finger-like superfamily protein |
| CRO_T007772 | AT3G19350 (3.00E-16) | MPC|maternally expressed pab C-terminal |
| CRO_T008073 | AT5G55310 (5.00E-92) | TOP1|TOPOISOMERASE 1; TOP1BETA|DNA topoisomerase 1 beta |
| CRO_T014904 | AT4G26000 (4.00E-78) | PEP|PEPPER |
| CRO_T028410 | - | - |
| CRO_T033333 | AT5G27380 (1.00E-168) | GSH2|glutathione synthetase 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000304 | redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 xylan biosynthetic process Transcription_related, Transcription factor: MYB translational elongation protein catabolic process | details |
| TissueCFM000390 | Ubiquitin_Proteasome_system, E3 adaptor: F-box geranyl acetate biosynthesis ajmaline and sarpagine biosynthesis volatile benzenoid biosynthesis I (ester formation) DNA topological change Ubiquitin_Proteasome_system, E2: UBC vesicle fusion exocytosis DNA topoisomerase type II (ATP-hydrolyzing) activity DNA topoisomerase type I activity chromosome SNARE complex RNA transport Ubiquitin mediated proteolysis | details |
| TissueCFM000391 | Ubiquitin_Proteasome_system, E3 adaptor: F-box RNA splicing DNA-templated transcription, initiation single organism reproductive process single-multicellular organism process RNA transport | details |
| TissueCFM000725 | DNA topological change actin filament depolymerization Regulation of actin cytoskeleton actin cytoskeleton DNA topoisomerase type I activity DNA topoisomerase type II (ATP-hydrolyzing) activity chromosome actin binding Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| TissueCFM000726 | Ubiquitin_Proteasome_system, E3 adaptor: F-box DNA topological change geranyl acetate biosynthesis DNA topoisomerase type I activity DNA topoisomerase type II (ATP-hydrolyzing) activity ajmaline and sarpagine biosynthesis volatile benzenoid biosynthesis I (ester formation) chromosome vacuole | details |
| TissueCFM000801 | RNA transport Autophagy - animal MAPK signaling pathway autophagosome assembly DNA topological change Transcription_related, Transcription factor: NF-YC Transcription_related, Transcription factor: Trihelix pre-autophagosomal structure | details |
| TissueCFM000836 | alanyl-tRNA aminoacylation regulation of protein kinase activity regulation of translational fidelity Transcription_related, Transcription factor: NF-YC Ser-tRNA(Ala) hydrolase activity ajmaline and sarpagine biosynthesis alanine-tRNA ligase activity triacylglycerol degradation protein kinase regulator activity tRNA binding RNA transport | details |
| TissueCFM000837 | sesaminol glucoside biosynthesis Transcription_related, Transcription regulator: mTERF transferase activity, transferring hexosyl groups coenzyme binding Plant hormone signal transduction RNA transport | details |
| TissueCFM000979 | Insulin resistance sucrose degradation III (sucrose invertase) mitotic spindle organization in nucleus protein insertion into ER membrane BAT3 complex regulation of protein phosphatase type 2A activity DNA topological change positive regulation of catalytic activity D-ribose metabolic process Fructose and mannose metabolism DNA topoisomerase type II (ATP-hydrolyzing) activity ribokinase activity DNA topoisomerase type I activity fructokinase activity protein tyrosine phosphatase activator activity protein phosphatase type 2A regulator activity carbohydrate phosphorylation protein phosphatase type 2A complex protein peptidyl-prolyl isomerization chromosome peptidyl-prolyl cis-trans isomerase activity response to abscisic acid | details |
| TissueCFM001148 | Ubiquitin_Proteasome_system, E3 adaptor: F-box photosystem photosynthesis, light reaction geranyl acetate biosynthesis Transcription_related, Transcription regulator: mTERF ajmaline and sarpagine biosynthesis volatile benzenoid biosynthesis I (ester formation) RNA transport | details |
| TissueCFM001364 | 4-hydroxyphenylpyruvate biosynthesis superpathway of plastoquinol biosynthesis rosmarinic acid biosynthesis I L-phenylalanine biosynthesis III (cytosolic, plants) 4-hydroxybenzoate biosynthesis I (eukaryotes) L-tyrosine:2-oxoglutarate aminotransferase activity DNA topoisomerase type II (ATP-hydrolyzing) activity DNA topoisomerase type I activity cellular amino acid metabolic process DNA topological change biosynthetic process cytosol chromosome | details |
| TissueCFM001368 | transferase activity, transferring hexosyl groups formation of glycosidic bonds, GlycosylTransferases: GTnc translational termination translation release factor activity, codon specific protein N-glycosylation (eukaryotic, high mannose) sesaminol glucoside biosynthesis triacylglycerol degradation | details |
| TissueCFM001383 | actin filament polymerization Group II intron splicing N-terminal peptidyl-glycine N-myristoylation regulation of vesicle targeting, to, from or within Golgi Arp2/3 complex-mediated actin nucleation DNA topological change translational termination cis-Golgi network cytoplasm Golgi medial cisterna Arp2/3 protein complex cytochrome complex assembly intra-Golgi vesicle-mediated transport ajmaline and sarpagine biosynthesis Flavonoid biosynthesis flavonoid biosynthesis (in equisetum) leucodelphinidin biosynthesis pinobanksin biosynthesis sesaminol glucoside biosynthesis | details |
| TissueCFM001385 | RNA transport actin filament polymerization Arp2/3 complex-mediated actin nucleation translational termination regulation of vesicle targeting, to, from or within Golgi intra-Golgi vesicle-mediated transport cis-Golgi network Arp2/3 protein complex Golgi medial cisterna vesicle fusion ER to Golgi vesicle-mediated transport protein transport SNARE interactions in vesicular transport SNARE binding actin binding translation release factor activity, codon specific SNAP receptor activity cell part Endocytosis mRNA surveillance pathway | details |
| TissueCFM001537 | 4-hydroxyphenylpyruvate biosynthesis superpathway of plastoquinol biosynthesis GPI-anchor transamidase complex rosmarinic acid biosynthesis I L-tyrosine:2-oxoglutarate aminotransferase activity GPI-anchor transamidase activity L-phenylalanine biosynthesis III (cytosolic, plants) cytosol attachment of GPI anchor to protein 4-hydroxybenzoate biosynthesis I (eukaryotes) cellular amino acid metabolic process biosynthetic process Glycosylphosphatidylinositol(GPI)-anchor biosynthesis Biosynthesis of amino acids RNA transport | details |
Expression profiles
 Show details about module gene expression profiling |