TissueCFM001002's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription factor: G2-like | 0.007159241 | TF family |
| SNARE complex disassembly | 0.007818687 | GO:0035494 |
| soluble NSF attachment protein activity | 0.009769893 | GO:0005483 |
| syntaxin binding | 0.009769893 | GO:0019905 |
| membrane fusion | 0.013674617 | GO:0061025 |
| Autophagy - yeast | 0.028728746 | KEGG pathway |
| MAPK signaling pathway | 0.028728746 | KEGG pathway |
| Proteasome | 0.033805218 | KEGG pathway |
| maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.042845516 | GO:0000462 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005595 | AT2G17990 (6.00E-98) | |
| CRO_T011774 | AT4G39795 (4.00E-19) | Protein of unknown function (DUF581) |
| CRO_T018340 | AT3G56190 (1.00E-81) | ALPHA-SNAP2|alpha-soluble NSF attachment protein 2 |
| CRO_T021484 | AT3G16857 (1.00E-20) | ARR1|response regulator 1 |
| CRO_T022229 | AT2G26590 (4.00E-19) | RPN13|regulatory particle non-ATPase 13 |
| CRO_T022829 | AT5G47100 (8.00E-102) | CBL9|calcineurin B-like protein 9 |
| CRO_T029256 | AT1G07840 (3.00E-71) | Sas10/Utp3/C1D family |
| CRO_T029732 | AT5G50250 (5.00E-16) | CP31B|chloroplast RNA-binding protein 31B |
| CRO_T029932 | AT3G08970 (9.00E-14) | TMS1|THERMOSENSITIVE MALE STERILE 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000784 | MAPK signaling pathway Ubiquitin_Proteasome_system, DUB: USP thiol-dependent ubiquitinyl hydrolase activity protein deubiquitination ubiquitin-dependent protein catabolic process small GTPase mediated signal transduction | details |
| TissueCFM000950 | cellulose synthase (UDP-forming) activity cellulose biosynthetic process cell wall organization N-Glycan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.9.3: Putative receptor like protein kinase Ubiquitin_Proteasome_system, E3: RING | details |
| TissueCFM001384 | Golgi medial cisterna cis-Golgi network MAPK signaling pathway SNARE interactions in vesicular transport regulation of vesicle targeting, to, from or within Golgi intra-Golgi vesicle-mediated transport protein transport translational initiation ER to Golgi vesicle-mediated transport vesicle fusion SNARE binding SNAP receptor activity SNARE complex Ubiquitin_Proteasome_system, E3 adaptor: F-box translation initiation factor activity Golgi membrane | details |
| TissueCFM001571 | Hsp70 protein binding heat acclimation protein oligomerization receptor recycling retromer complex multivesicular body Transcription_related, Transcription factor: G2-like Transcription_related, Transcription factor: FAR1 retrograde transport, endosome to Golgi sulfate assimilation regulation of transcription, DNA-templated protein targeting to vacuole cellular response to oxidative stress oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor protein disulfide oxidoreductase activity protein transporter activity | details |
| TissueCFM001635 | iron-sulfur cluster assembly negative regulation of apoptotic process mitochondrial intermembrane space Transcription_related, Transcription factor: FAR1 | details |
| TissueCFM001691 | diacylglycerol and triacylglycerol biosynthesis N-Glycan biosynthesis Protein_kinases_phosphatases, PPC:1.Other: Other Protein Kinase | details |
| TissueCFM001692 | tissue development regulation of response to stimulus anatomical structure morphogenesis cellular response to stimulus plant organ development response to organic substance response to bacterium Transcription_related, Transcription factor: MYB-related Ubiquitin_Proteasome_system, DUB: USP response to osmotic stress defense response to other organism cellular protein metabolic process maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ABC transporters | details |
Expression profiles
 Show details about module gene expression profiling |