TissueCFM001384's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Golgi medial cisterna | 0.009119644 | GO:0005797 |
| cis-Golgi network | 0.009119644 | GO:0005801 |
| MAPK signaling pathway | 0.010080281 | KEGG pathway |
| SNARE interactions in vesicular transport | 0.010080281 | KEGG pathway |
| regulation of vesicle targeting, to, from or within Golgi | 0.013029989 | GO:0048209 |
| intra-Golgi vesicle-mediated transport | 0.022075826 | GO:0006891 |
| protein transport | 0.022075826 | GO:0015031 |
| translational initiation | 0.022075826 | GO:0006413 |
| ER to Golgi vesicle-mediated transport | 0.022075826 | GO:0006888 |
| vesicle fusion | 0.022075826 | GO:0006906 |
| SNARE binding | 0.028735521 | GO:0000149 |
| SNAP receptor activity | 0.028735521 | GO:0005484 |
| SNARE complex | 0.033792973 | GO:0031201 |
| Ubiquitin_Proteasome_system, E3 adaptor: F-box | 0.036841041 | ubs family |
| translation initiation factor activity | 0.038203804 | GO:0003743 |
| Golgi membrane | 0.041514609 | GO:0000139 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007901 | AT1G15880 (3.00E-20) | GOS11|golgi snare 11 |
| CRO_T013162 | AT4G17520 (2.00E-38) | Hyaluronan / mRNA binding family |
| CRO_T022045 | AT4G12560 (3.00E-28) | CPR1|CONSTITUTIVE EXPRESSER OF PR GENES 1; CPR30|CONSTITUTIVE EXPRESSER OF PR GENES 30 |
| CRO_T022829 | AT5G47100 (8.00E-102) | CBL9|calcineurin B-like protein 9 |
| CRO_T031204 | AT3G26400 (4.00E-44) | EIF4B1|eukaryotic translation initiation factor 4B1 |
| CRO_T033524 | AT2G38450 (4.00E-35) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000554 | molybdenum cofactor biosynthesis Transcriptional misregulation in cancers nucleic acid binding nucleotide binding carbohydrate metabolic process | details |
| TissueCFM000597 | Transcription_related, Transcription regulator: LIM SREBP signaling pathway endoplasmic reticulum signal peptide binding cholesterol binding U2-type catalytic step 1 spliceosome cytoskeleton organization SRP-dependent cotranslational protein targeting to membrane signal recognition particle, endoplasmic reticulum targeting ER-associated ubiquitin-dependent protein catabolic process 7S RNA binding Protein export mRNA splicing, via spliceosome Endocytosis catalytic step 2 spliceosome small GTPase mediated signal transduction | details |
| TissueCFM000674 | cortical microtubule organization chaperone-mediated protein complex assembly prefoldin complex mRNA surveillance pathway translational initiation chaperone binding protein folding | details |
| TissueCFM000675 | nucleic acid binding histidine phosphotransfer kinase activity nucleotide binding protein histidine kinase binding Transcriptional misregulation in cancers cytokinin-activated signaling pathway phosphorelay signal transduction system mRNA surveillance pathway | details |
| TissueCFM000784 | MAPK signaling pathway Ubiquitin_Proteasome_system, DUB: USP thiol-dependent ubiquitinyl hydrolase activity protein deubiquitination ubiquitin-dependent protein catabolic process small GTPase mediated signal transduction | details |
| TissueCFM001002 | Transcription_related, Transcription factor: G2-like SNARE complex disassembly soluble NSF attachment protein activity syntaxin binding membrane fusion Autophagy - yeast MAPK signaling pathway Proteasome maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | details |
| TissueCFM001205 | Ubiquitin_Proteasome_system, DUB: UCH thiol-dependent ubiquitin-specific protease activity shoot system morphogenesis Transcription_related, Transcription factor: HSF protein deubiquitination leaf development ubiquitin-dependent protein catabolic process | details |
| TissueCFM001368 | transferase activity, transferring hexosyl groups formation of glycosidic bonds, GlycosylTransferases: GTnc translational termination translation release factor activity, codon specific protein N-glycosylation (eukaryotic, high mannose) sesaminol glucoside biosynthesis triacylglycerol degradation | details |
| TissueCFM001383 | actin filament polymerization Group II intron splicing N-terminal peptidyl-glycine N-myristoylation regulation of vesicle targeting, to, from or within Golgi Arp2/3 complex-mediated actin nucleation DNA topological change translational termination cis-Golgi network cytoplasm Golgi medial cisterna Arp2/3 protein complex cytochrome complex assembly intra-Golgi vesicle-mediated transport ajmaline and sarpagine biosynthesis Flavonoid biosynthesis flavonoid biosynthesis (in equisetum) leucodelphinidin biosynthesis pinobanksin biosynthesis sesaminol glucoside biosynthesis | details |
| TissueCFM001385 | RNA transport actin filament polymerization Arp2/3 complex-mediated actin nucleation translational termination regulation of vesicle targeting, to, from or within Golgi intra-Golgi vesicle-mediated transport cis-Golgi network Arp2/3 protein complex Golgi medial cisterna vesicle fusion ER to Golgi vesicle-mediated transport protein transport SNARE interactions in vesicular transport SNARE binding actin binding translation release factor activity, codon specific SNAP receptor activity cell part Endocytosis mRNA surveillance pathway | details |
| TissueCFM001458 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity cytoskeleton organization gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt microtubule binding | details |
| TissueCFM001733 | leaf development Ubiquitin_Proteasome_system, DUB: UCH shoot system morphogenesis histone H3-K9 demethylation negative regulation of histone acetylation response to brassinosteroid Transcription_related, Transcription regulator: Jumonji vesicle docking protein deubiquitination vegetative to reproductive phase transition of meristem unidimensional cell growth cellular metabolic process organic substance metabolic process vesicle fusion thiol-dependent ubiquitin-specific protease activity | details |
Expression profiles
 Show details about module gene expression profiling |