TissueCFM001330's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| low-affinity nitrate transport | 0.004048762 | GO:0080055 |
| low-affinity nitrate transmembrane transporter activity | 0.006436646 | GO:0080054 |
| meristem structural organization | 0.007417797 | GO:0009933 |
| phospholipid biosynthetic process | 0.007417797 | GO:0008654 |
| Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family | 0.007440758 | kinase family |
| oligopeptide transport | 0.007584141 | GO:0006857 |
| Glycerophospholipid metabolism | 0.009890274 | KEGG pathway |
| carboxy-lyase activity | 0.011259969 | GO:0016831 |
| nucleotide binding | 0.012320819 | GO:0000166 |
| Transcription_related, Transcription factor: B3 | 0.013515812 | TF family |
| protein autophosphorylation | 0.019770164 | GO:0046777 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001450 | AT1G16640 (5.00E-08) | AP2/B3-like transcriptional factor family protein |
| CRO_T003889 | AT1G52190 (9.00E-149) | NPF1.2|NRT1/ PTR family 1.2; NRT1.11|nitrate transporter 1.11 |
| CRO_T005799 | - | - |
| CRO_T010199 | AT1G57870 (6.00E-115) | ATSK42|shaggy-like kinase 42 |
| CRO_T024159 | - | - |
| CRO_T030051 | AT5G57190 (1.00E-104) | PSD2|phosphatidylserine decarboxylase 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000074 | low-affinity nitrate transmembrane transporter activity low-affinity nitrate transport oligopeptide transport | details |
| TissueCFM000330 | low-affinity nitrate transmembrane transporter activity low-affinity nitrate transport oligopeptide transport | details |
| TissueCFM000403 | Transcription_related, Transcription factor: AP2 low-affinity nitrate transmembrane transporter activity low-affinity nitrate transport | details |
| TissueCFM000431 | Photosynthesis phosphate ion binding low-affinity nitrate transmembrane transporter activity low-affinity nitrate transport | details |
| TissueCFM001000 | Transcription_related, Transcription factor: B3 | details |
| TissueCFM001032 | low-affinity nitrate transmembrane transporter activity low-affinity nitrate transport oligopeptide transport | details |
| TissueCFM001052 | low-affinity nitrate transmembrane transporter activity phosphate ion binding Fc gamma R-mediated phagocytosis low-affinity nitrate transport protein stabilization oligopeptide transport Transcription_related, Transcription factor: ERF Photosynthesis photosystem II | details |
| TissueCFM001089 | phospholipid biosynthetic process glucan catabolic process hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc carboxy-lyase activity Glycerophospholipid metabolism N-Glycan biosynthesis beta-glucosidase activity | details |
| TissueCFM001111 | low-affinity nitrate transport low-affinity nitrate transmembrane transporter activity oligopeptide transport ATP-dependent helicase activity poly(A) RNA binding RNA processing spliceosomal complex ATP-dependent RNA helicase activity intracellular part | details |
| TissueCFM001153 | low-affinity nitrate transmembrane transporter activity low-affinity nitrate transport oligopeptide transport | details |
| TissueCFM001160 | Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family delta24-sterol reductase activity Transcription_related, Transcription factor: bZIP phosphatidylcholine acyl editing phospholipases plant sterol biosynthesis lignin metabolic process Steroid biosynthesis 5S rRNA binding O-acyltransferase activity meristem structural organization plant-type secondary cell wall biogenesis unidimensional cell growth brassinosteroid biosynthetic process protein autophosphorylation lipid metabolic process | details |
Expression profiles
 Show details about module gene expression profiling |