TissueCFM001217's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Peroxisome | 0.010003595 | KEGG pathway |
| phospholipid transport | 0.013692327 | GO:0015914 |
| polarity specification of adaxial/abaxial axis | 0.013692327 | GO:0009944 |
| determination of bilateral symmetry | 0.013692327 | GO:0009855 |
| xylem development | 0.013692327 | GO:0010089 |
| radial pattern formation | 0.013692327 | GO:0009956 |
| protein targeting to peroxisome | 0.013692327 | GO:0006625 |
| meristem initiation | 0.013692327 | GO:0010014 |
| phosphatidic acid transporter activity | 0.015046147 | GO:1990050 |
| xylem and phloem pattern formation | 0.017964011 | GO:0010051 |
| benzoate biosynthesis I (CoA-dependent, β-oxidative) | 0.018464802 | plantCyc |
| mitochondrial intermembrane space | 0.026803906 | GO:0005758 |
| cell differentiation | 0.033665453 | GO:0030154 |
| flower development | 0.040543307 | GO:0009908 |
| cellular protein metabolic process | 0.040543307 | GO:0044267 |
| transcription regulatory region DNA binding | 0.042545806 | GO:0044212 |
| cysteine-type peptidase activity | 0.042545806 | GO:0008234 |
| Transcription_related, Transcription factor: ARF | 0.043789717 | TF family |
| Ubiquitin_Proteasome_system, DUB: USP | 0.045389384 | ubs family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002440 | AT1G13860 (0) | QUL1|QUASIMODO2 LIKE 1 |
| CRO_T005829 | AT1G12380 (0) | unknown protein |
| CRO_T009458 | AT1G30490 (0) | PHV|PHAVOLUTA |
| CRO_T009908 | AT3G27325 (0) | hydrolases, acting on ester bonds |
| CRO_T010404 | AT1G30090 (1.00E-10) | Galactose oxidase/kelch repeat superfamily protein |
| CRO_T012919 | AT2G05720 (4.00E-14) | Transducin/WD40 repeat-like superfamily protein |
| CRO_T014916 | AT1G30330 (2.00E-100) | ARF6|auxin response factor 6 |
| CRO_T022081 | AT5G13070 (9.00E-89) | MSF1-like family protein |
| CRO_T025478 | AT3G60320 (0) | Protein of unknown function (DUF630 and DUF632) |
| CRO_T027862 | AT5G10790 (6.00E-108) | UBP22|ubiquitin-specific protease 22 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000298 | Transcription_related, Transcription factor: ARF receptor serine/threonine kinase binding floral organ development basipetal auxin transport gametophyte development regulation of meristem growth radial pattern formation leaf vascular tissue pattern formation meristem structural organization multidimensional cell growth leaf morphogenesis protein self-association flower development Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII auxin-activated signaling pathway small GTPase mediated signal transduction | details |
| TissueCFM000326 | Ubiquitin_Proteasome_system, E3 adaptor: DWD protein targeting to peroxisome histone H3-K36 methylation histone H3-K4 methylation negative regulation of flower development 1-phosphatidylinositol-4-phosphate 5-kinase activity 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis phosphatidylinositol phosphorylation Cul4-RING E3 ubiquitin ligase complex spliceosomal complex mRNA splicing, via spliceosome Inositol phosphate metabolism Peroxisome RNA degradation | details |
| TissueCFM000498 | glucose and glucose-1-phosphate degradation mannitol biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) protein targeting to peroxisome protein import into chloroplast stroma ABC transporters Peroxisome integral component of mitochondrial inner membrane mitochondrial inner membrane presequence translocase complex protein import into mitochondrial matrix Transcription_related, Transcription factor: SBP protein channel activity | details |
| TissueCFM000804 | protein phosphatase type 2A complex regulation of protein phosphatase type 2A activity mRNA surveillance pathway Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII protein phosphatase type 2A regulator activity signal transduction | details |
| TissueCFM001296 | phosphatidic acid transporter activity photoreceptor activity phospholipid transport protein-tetrapyrrole linkage detection of visible light mitochondrial intermembrane space red, far-red light phototransduction phosphorelay sensor kinase activity spliceosomal complex Circadian rhythm - plant phosphorelay signal transduction system signal transduction by protein phosphorylation protein-chromophore linkage mRNA splicing, via spliceosome protein homodimerization activity | details |
| TissueCFM001567 | site-specific DNA-methyltransferase (adenine-specific) activity phosphatidic acid transporter activity protein methyltransferase activity DNA methylation on adenine cellular response to stimulus tissue development plant organ development phospholipid transport response to virus negative regulation of defense response to virus anatomical structure morphogenesis regulation of response to stimulus mitochondrial intermembrane space protein methylation response to organic substance response to bacterium Tyrosine metabolism defense response to other organism response to osmotic stress single-organism cellular process translational initiation regulation of cellular process MAPK signaling pathway - plant RNA transport | details |
| TissueCFM001692 | tissue development regulation of response to stimulus anatomical structure morphogenesis cellular response to stimulus plant organ development response to organic substance response to bacterium Transcription_related, Transcription factor: MYB-related Ubiquitin_Proteasome_system, DUB: USP response to osmotic stress defense response to other organism cellular protein metabolic process maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ABC transporters | details |
| TissueCFM001717 | farnesol dehydrogenase activity farnesol metabolic process transmembrane transport ABC transporters Terpenoid backbone biosynthesis negative regulation of abscisic acid-activated signaling pathway Transcription_related, Transcription factor: MYB-related Ubiquitin_Proteasome_system, DUB: USP cellular protein metabolic process cysteine-type peptidase activity coenzyme binding | details |
| TissueCFM001729 | phosphatidic acid transporter activity cell wall repair phospholipid transport mitochondrial intermembrane space mitochondrial proton-transporting ATP synthase complex cobalt ion binding zinc ion binding pollen development root development defense response to fungus defense response to bacterium copper ion binding Protein processing in endoplasmic reticulum | details |
| TissueCFM001805 | transmembrane transport ABC transporters cellular protein metabolic process Transcription_related, Transcription factor: MYB-related Ubiquitin_Proteasome_system, DUB: USP cysteine-type peptidase activity | details |
Expression profiles
 Show details about module gene expression profiling |