TissueCFM001358's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| homogalacturonan degradation | 0.012958973 | plantCyc |
| eukaryotic translation initiation factor 3 complex, eIF3m | 0.022077732 | GO:0071541 |
| mRNA cleavage factor complex | 0.022077732 | GO:0005849 |
| mRNA polyadenylation | 0.049440361 | GO:0006378 |
| pollen germination | 0.049440361 | GO:0009846 |
| innate immune response | 0.049440361 | GO:0045087 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001156 | AT2G29760 (3.00E-92) | OTP81|ORGANELLE TRANSCRIPT PROCESSING 81 |
| CRO_T001158 | AT4G25550 (1.00E-104) | Cleavage/polyadenylation specificity factor, 25kDa subunit |
| CRO_T001406 | AT2G39990 (3.00E-116) | AteIF3f|eukaryotic translation initiation factor 3 subunit F; EIF2|eukaryotic translation initiation factor 2 |
| CRO_T008289 | AT5G18610 (3.00E-152) | Protein kinase superfamily protein |
| CRO_T011401 | AT5G44210 (3.00E-19) | ATERF-9|ERF DOMAIN PROTEIN- 9; ATERF9|ERF DOMAIN PROTEIN 9 |
| CRO_T015570 | AT5G64480 (3.00E-18) | unknown protein |
| CRO_T016359 | AT5G19730 (2.00E-91) | Pectin lyase-like superfamily protein |
| CRO_T023283 | AT1G33810 (5.00E-45) | unknown protein |
| CRO_T027301 | AT5G24330 (4.00E-107) | ATXR6|ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6; SDG34|SET DOMAIN PROTEIN 34 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000591 | peroxisomal importomer complex integral component of peroxisomal membrane protein C-terminus binding protein monoubiquitination embryonic morphogenesis protein import into peroxisome matrix fatty acid beta-oxidation Peroxisome Transcription_related, Transcription factor: ERF | details |
| TissueCFM001191 | mannitol biosynthesis condensed chromosome outer kinetochore checkpoint clamp complex spindle microtubule Cell cycle - yeast NOD-like receptor signaling pathway DNA damage checkpoint innate immune response chromosome segregation Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII sulfate assimilation cellular response to oxidative stress Pentose and glucuronate interconversions cell division peptidyl-tyrosine phosphorylation | details |
| TissueCFM001237 | L-tryptophan biosynthesis phosphate acquisition phosphoribosylanthranilate isomerase activity Transcription_related, Transcription factor: ERF tryptophan biosynthetic process acid phosphatase activity microtubule-severing ATPase activity | details |
| TissueCFM001325 | xylan biosynthesis system development innate immune response formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: EIL galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity MAPK signaling pathway - plant Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII peptidyl-tyrosine phosphorylation | details |
| TissueCFM001465 | diacylglycerol biosynthesis (PUFA enrichment in oilseed) cation transmembrane transporter activity cation transmembrane transport potassium ion transport Transcription_related, Transcription regulator: PHD methyltransferase activity | details |
| TissueCFM001668 | multivesicular body assembly intralumenal vesicle formation late endosome membrane ubiquitin binding transcription factor activity, sequence-specific DNA binding regulation of transcription, DNA-templated Transcription_related, Transcription factor: bZIP Transcription_related, Transcription factor: ERF metal ion binding | details |
| TissueCFM001716 | Ubiquitin_Proteasome_system, DUB: JAMM regulation of cell differentiation regulation of RNA splicing nucleus eukaryotic translation initiation factor 3 complex, eIF3m translation initiation factor binding nucleotide binding nucleic acid binding regulation of translational initiation mRNA processing formation of translation preinitiation complex pollen germination zinc ion binding cytoplasmic mRNA processing body eukaryotic 48S preinitiation complex eukaryotic 43S preinitiation complex proteasome complex Proteasome embryo development ending in seed dormancy RNA transport translation initiation factor activity | details |
| TissueCFM001739 | multivesicular body assembly intralumenal vesicle formation late endosome membrane ubiquitin binding riboflavin synthase complex chloroplast stroma flavin biosynthesis I (bacteria and plants) Riboflavin metabolism 6,7-dimethyl-8-ribityllumazine synthase activity protein metabolic process riboflavin biosynthetic process Transcription_related, Transcription factor: bZIP protein histidine kinase binding metal ion binding | details |
Expression profiles
 Show details about module gene expression profiling |