TissueCFM001626's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| cellulose catabolic process | 0.003541648 | GO:0030245 |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.010624943 | cazy family |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.010873683 | cazy family |
| cellulase activity | 0.014756865 | GO:0008810 |
| calcium-dependent phospholipid binding | 0.014756865 | GO:0005544 |
| transferase activity, transferring glycosyl groups | 0.043069903 | GO:0016757 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008731 | AT1G68140 (3.00E-39) | Protein of unknown function (DUF1644) |
| CRO_T010317 | AT1G22610 (0) | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein |
| CRO_T015089 | AT1G19940 (0) | AtGH9B5|glycosyl hydrolase 9B5 |
| CRO_T022971 | AT5G42220 (8.00E-23) | Ubiquitin-like superfamily protein |
| CRO_T027953 | AT5G08710 (8.00E-23) | RUG1|RCC1/UVR8/GEF-like 1 |
| CRO_T030244 | AT2G12550 (1.00E-80) | NUB1|homolog of human NUB1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000339 | Kdo transfer to lipid IVA I formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: Tify Lipopolysaccharide biosynthesis xylan biosynthetic process | details |
| TissueCFM000650 | protein polyubiquitination L-ascorbate degradation IV D-myo-inositol (1,4,5)-trisphosphate degradation flavin biosynthesis I (bacteria and plants) L-idonate catabolic process | details |
| TissueCFM000926 | cytoplasmic microtubule organization oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor Aminoacyl-tRNA biosynthesis MAPK signaling pathway - plant microtubule-severing ATPase activity cytoplasmic part cellular oxidant detoxification | details |
| TissueCFM001204 | 2-oxoglutarate decarboxylation to succinyl-CoA 2-oxoisovalerate decarboxylation to isobutanoyl-CoA glycine cleavage pyruvate decarboxylation to acetyl CoA Transcription_related, Transcription factor: DBP Transcription_related, Transcription factor: GRF | details |
| TissueCFM001311 | CMP-3-deoxy-D-manno-octulosonate biosynthesis AMP binding high-affinity secondary active ammonium transmembrane transporter activity acetate-CoA ligase activity Lipopolysaccharide biosynthesis acetyl-CoA biosynthetic process from acetate oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor organic cation transport ammonium transmembrane transport nitrogen utilization | details |
| TissueCFM001369 | CTD phosphatase activity dephosphorylation of RNA polymerase II C-terminal domain cytokinesis by cell plate formation cell division site cell plate nuclear envelope RNA transport | details |
| TissueCFM001370 | homogalacturonan degradation cell division site hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: SET cell plate | details |
| TissueCFM001508 | D-myo-inositol (1,4,5)-trisphosphate degradation Protein_kinases_phosphatases, PPC:1.12.3: Leucine Rich Repeat Kinase VII Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III exonuclease activity transmembrane receptor protein tyrosine kinase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Starch and sucrose metabolism phosphatidylinositol dephosphorylation endonuclease activity | details |
| TissueCFM001590 | D-myo-inositol (1,4,5)-trisphosphate degradation plasmodesma high-affinity secondary active ammonium transmembrane transporter activity exonuclease activity phosphatidylinositol dephosphorylation nitrogen utilization ammonium transmembrane transport organic cation transport Fanconi anemia pathway adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Rho guanyl-nucleotide exchange factor activity DNA-directed DNA polymerase activity endonuclease activity damaged DNA binding DNA biosynthetic process positive regulation of GTPase activity polysaccharide binding Starch and sucrose metabolism nucleic acid phosphodiester bond hydrolysis DNA repair | details |
| TissueCFM001610 | meristem development receptor serine/threonine kinase binding cellulose catabolic process NAD+ ADP-ribosyltransferase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc cellulase activity Transcription_related, Transcription factor: C2H2 integral component of membrane | details |
| TissueCFM001611 | auxin transport anther wall tapetum development animal organ development trichome morphogenesis Rho guanyl-nucleotide exchange factor activity 3-hydroxyisobutyryl-CoA hydrolase activity signal transducer activity Transcription_related, Transcription factor: MYB Ubiquitin_Proteasome_system, E3 adaptor: BTB positive regulation of GTPase activity signal transduction | details |
| TissueCFM001625 | details | |
| TissueCFM001704 | Base excision repair Lysine degradation DNA-3-methyladenine glycosylase activity base-excision repair glutamine metabolic process adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: SET | details |
| TissueCFM001706 | Sulfur relay system coumarin biosynthesis (via 2-coumarate) molybdenum cofactor biosynthesis URM1 activating enzyme activity protein adenylyltransferase activity thiosulfate sulfurtransferase activity protein urmylation protein adenylylation tRNA wobble position uridine thiolation enzyme active site formation via cysteine modification to L-cysteine persulfide Mo-molybdopterin cofactor biosynthetic process NAD+ ADP-ribosyltransferase activity glycosyl compound metabolic process cellulose catabolic process lignin catabolic process lignin biosynthetic process adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 Ubiquitin_Proteasome_system, E1: ThiF cysteine-type endopeptidase activity cellulase activity beta-glucosidase activity hydroquinone:oxygen oxidoreductase activity extracellular space Lysosome Transcription_related, Transcription factor: C2H2 oxidoreductase activity, oxidizing metal ions Starch and sucrose metabolism | details |
| TissueCFM001748 | Fanconi anemia pathway integral component of membrane meristem development receptor serine/threonine kinase binding lignin catabolic process lignin biosynthetic process cellulose catabolic process DNA biosynthetic process adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 damaged DNA binding cellulase activity NAD+ ADP-ribosyltransferase activity DNA-directed DNA polymerase activity hydroquinone:oxygen oxidoreductase activity Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII Transcription_related, Transcription factor: C2H2 | details |
Expression profiles
 Show details about module gene expression profiling |