TissueCFM001526's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| CA1P biosynthesis | 0.002127502 | plantCyc |
| TNF signaling pathway | 0.002925532 | KEGG pathway |
| lysyl-tRNA aminoacylation | 0.003900421 | GO:0006430 |
| lysine-tRNA ligase activity | 0.007709663 | GO:0004824 |
| phosphoglycerate mutase activity | 0.007709663 | GO:0004619 |
| plant sterol biosynthesis | 0.008227641 | plantCyc |
| Transcription_related, Transcription factor: G2-like | 0.014336257 | TF family |
| cytosol | 0.023905667 | GO:0005829 |
| phosphatase activity | 0.029512248 | GO:0016791 |
| Aminoacyl-tRNA biosynthesis | 0.031065353 | KEGG pathway |
| protein folding | 0.034835127 | GO:0006457 |
| dephosphorylation | 0.034835127 | GO:0016311 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T014000 | AT5G56550 (1.00E-08) | ATOXS3|OXIDATIVE STRESS 3 |
| CRO_T015787 | AT3G11710 (8.00E-180) | ATKRS-1|lysyl-tRNA synthetase 1 |
| CRO_T027531 | AT5G06800 (9.00E-19) | myb-like HTH transcriptional regulator family protein |
| CRO_T029688 | AT5G61790 (3.00E-174) | CNX1|calnexin 1 |
| CRO_T030111 | AT3G29270 (6.00E-63) | RING/U-box superfamily protein |
| CRO_T033118 | AT5G22620 (7.00E-45) | phosphoglycerate/bisphosphoglycerate mutase family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000108 | lysyl-tRNA aminoacylation plasmodesma lysine-tRNA ligase activity single-organism metabolic process phosphatidylcholine acyl editing phospholipases phospholipid remodeling (phosphatidylcholine, yeast) cytosol Peroxisome Aminoacyl-tRNA biosynthesis Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TissueCFM000416 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc endoplasmic reticulum lysyl-tRNA aminoacylation sucrose alpha-glucosidase activity glycopeptide alpha-N-acetylgalactosaminidase activity lysine-tRNA ligase activity phosphorelay sensor kinase activity phosphorelay signal transduction system signal transduction by protein phosphorylation | details |
| TissueCFM000489 | lysyl-tRNA aminoacylation flavin-containing compound metabolic process FAD diphosphatase activity lysine-tRNA ligase activity Transcription_related, Transcription factor: FAR1 nucleic acid binding phosphatase activity | details |
| TissueCFM001087 | nucleic acid binding amino acid homeostasis amino acid export amino acid import lysyl-tRNA aminoacylation lysine-tRNA ligase activity maturation of 5.8S rRNA spliceosomal complex assembly maturation of LSU-rRNA amino acid transmembrane transport amino acid transmembrane transporter activity Aminoacyl-tRNA biosynthesis catalytic step 2 spliceosome preribosome, large subunit precursor U2-type prespliceosome U2 snRNP | details |
| TissueCFM001177 | lysyl-tRNA aminoacylation Mo-molybdopterin cofactor biosynthetic process molybdenum cofactor biosynthesis molybdopterin synthase complex lysine-tRNA ligase activity Aminoacyl-tRNA biosynthesis RNA transport | details |
| TissueCFM001502 | sucrose biosynthetic process regulation of lipid metabolic process sucrose-phosphate phosphatase activity sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II mitochondrial large ribosomal subunit RNA processing dephosphorylation apoplast | details |
| TissueCFM001527 | benzoate biosynthesis III (CoA-dependent, non-β-oxidative) CA1P biosynthesis fatty acid α-oxidation I TNF signaling pathway lysyl-tRNA aminoacylation 3-chloroallyl aldehyde dehydrogenase activity lysine-tRNA ligase activity phosphoglycerate mutase activity aldehyde dehydrogenase (NAD) activity phosphatase activity Glycolysis / Gluconeogenesis cytosol Aminoacyl-tRNA biosynthesis single-organism metabolic process dephosphorylation protein folding unfolded protein binding | details |
| TissueCFM001670 | regulation of ruffle assembly lysyl-tRNA aminoacylation sphingolipid biosynthesis (plants) ruffle membrane Sphingolipid metabolism Transcription_related, Transcription factor: C2H2 Aminoacyl-tRNA biosynthesis lysine-tRNA ligase activity nucleic acid binding fatty acid biosynthetic process phosphatidylinositol binding | details |
| TissueCFM001671 | lysyl-tRNA aminoacylation regulation of ruffle assembly ruffle membrane tRNA processing lysine-tRNA ligase activity nucleic acid binding Transcription_related, Transcription factor: C2H2 rRNA processing Aminoacyl-tRNA biosynthesis Ribosome biogenesis in eukaryotes phosphatidylinositol binding | details |
| TissueCFM001702 | adenosine ribonucleotides de novo biosynthesis regulation of translation lysyl-tRNA aminoacylation lysine-tRNA ligase activity nucleic acid binding spliceosomal complex assembly response to cold mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) ATP hydrolysis coupled proton transport response to heat U2 snRNP U2-type prespliceosome pollen tube ATP synthesis coupled proton transport proton-transporting ATP synthase activity, rotational mechanism catalytic step 2 spliceosome | details |
| TissueCFM001713 | phospholipid desaturation lysyl-tRNA aminoacylation Transcription_related, Transcription factor: C2H2 lysine-tRNA ligase activity nucleic acid binding Aminoacyl-tRNA biosynthesis Ribosome biogenesis in eukaryotes tRNA processing rRNA processing chloroplast inner membrane | details |
Expression profiles
 Show details about module gene expression profiling |