TissueCFM001527's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| benzoate biosynthesis III (CoA-dependent, non-β-oxidative) | 0.003898116 | plantCyc |
| CA1P biosynthesis | 0.003898116 | plantCyc |
| fatty acid α-oxidation I | 0.003898116 | plantCyc |
| TNF signaling pathway | 0.004432624 | KEGG pathway |
| lysyl-tRNA aminoacylation | 0.005909729 | GO:0006430 |
| 3-chloroallyl aldehyde dehydrogenase activity | 0.00752274 | GO:0004028 |
| lysine-tRNA ligase activity | 0.00752274 | GO:0004824 |
| phosphoglycerate mutase activity | 0.00752274 | GO:0004619 |
| aldehyde dehydrogenase (NAD) activity | 0.019165985 | GO:0004029 |
| phosphatase activity | 0.020735166 | GO:0016791 |
| Glycolysis / Gluconeogenesis | 0.022854559 | KEGG pathway |
| cytosol | 0.023905667 | GO:0005829 |
| Aminoacyl-tRNA biosynthesis | 0.031379145 | KEGG pathway |
| single-organism metabolic process | 0.037543922 | GO:0044710 |
| dephosphorylation | 0.039585372 | GO:0016311 |
| protein folding | 0.039585372 | GO:0006457 |
| unfolded protein binding | 0.041222506 | GO:0051082 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T014000 | AT5G56550 (1.00E-08) | ATOXS3|OXIDATIVE STRESS 3 |
| CRO_T015787 | AT3G11710 (8.00E-180) | ATKRS-1|lysyl-tRNA synthetase 1 |
| CRO_T026044 | AT4G36250 (5.00E-136) | ALDH3F1|aldehyde dehydrogenase 3F1 |
| CRO_T029688 | AT5G61790 (3.00E-174) | CNX1|calnexin 1 |
| CRO_T032215 | AT3G50190 (8.00E-58) | Plant protein of unknown function (DUF247) |
| CRO_T033118 | AT5G22620 (7.00E-45) | phosphoglycerate/bisphosphoglycerate mutase family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000108 | lysyl-tRNA aminoacylation plasmodesma lysine-tRNA ligase activity single-organism metabolic process phosphatidylcholine acyl editing phospholipases phospholipid remodeling (phosphatidylcholine, yeast) cytosol Peroxisome Aminoacyl-tRNA biosynthesis Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TissueCFM000416 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc endoplasmic reticulum lysyl-tRNA aminoacylation sucrose alpha-glucosidase activity glycopeptide alpha-N-acetylgalactosaminidase activity lysine-tRNA ligase activity phosphorelay sensor kinase activity phosphorelay signal transduction system signal transduction by protein phosphorylation | details |
| TissueCFM000489 | lysyl-tRNA aminoacylation flavin-containing compound metabolic process FAD diphosphatase activity lysine-tRNA ligase activity Transcription_related, Transcription factor: FAR1 nucleic acid binding phosphatase activity | details |
| TissueCFM001087 | nucleic acid binding amino acid homeostasis amino acid export amino acid import lysyl-tRNA aminoacylation lysine-tRNA ligase activity maturation of 5.8S rRNA spliceosomal complex assembly maturation of LSU-rRNA amino acid transmembrane transport amino acid transmembrane transporter activity Aminoacyl-tRNA biosynthesis catalytic step 2 spliceosome preribosome, large subunit precursor U2-type prespliceosome U2 snRNP | details |
| TissueCFM001177 | lysyl-tRNA aminoacylation Mo-molybdopterin cofactor biosynthetic process molybdenum cofactor biosynthesis molybdopterin synthase complex lysine-tRNA ligase activity Aminoacyl-tRNA biosynthesis RNA transport | details |
| TissueCFM001526 | CA1P biosynthesis TNF signaling pathway lysyl-tRNA aminoacylation lysine-tRNA ligase activity phosphoglycerate mutase activity plant sterol biosynthesis Transcription_related, Transcription factor: G2-like cytosol phosphatase activity Aminoacyl-tRNA biosynthesis protein folding dephosphorylation | details |
| TissueCFM001670 | regulation of ruffle assembly lysyl-tRNA aminoacylation sphingolipid biosynthesis (plants) ruffle membrane Sphingolipid metabolism Transcription_related, Transcription factor: C2H2 Aminoacyl-tRNA biosynthesis lysine-tRNA ligase activity nucleic acid binding fatty acid biosynthetic process phosphatidylinositol binding | details |
| TissueCFM001671 | lysyl-tRNA aminoacylation regulation of ruffle assembly ruffle membrane tRNA processing lysine-tRNA ligase activity nucleic acid binding Transcription_related, Transcription factor: C2H2 rRNA processing Aminoacyl-tRNA biosynthesis Ribosome biogenesis in eukaryotes phosphatidylinositol binding | details |
| TissueCFM001702 | adenosine ribonucleotides de novo biosynthesis regulation of translation lysyl-tRNA aminoacylation lysine-tRNA ligase activity nucleic acid binding spliceosomal complex assembly response to cold mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) ATP hydrolysis coupled proton transport response to heat U2 snRNP U2-type prespliceosome pollen tube ATP synthesis coupled proton transport proton-transporting ATP synthase activity, rotational mechanism catalytic step 2 spliceosome | details |
| TissueCFM001713 | phospholipid desaturation lysyl-tRNA aminoacylation Transcription_related, Transcription factor: C2H2 lysine-tRNA ligase activity nucleic acid binding Aminoacyl-tRNA biosynthesis Ribosome biogenesis in eukaryotes tRNA processing rRNA processing chloroplast inner membrane | details |
Expression profiles
 Show details about module gene expression profiling |