TissueCFM001426's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.00648296 | cazy family |
| acylglycerol lipase activity | 0.013317417 | GO:0047372 |
| phospholipase activity | 0.013317417 | GO:0004620 |
| pheophorbide a oxygenase activity | 0.013317417 | GO:0032441 |
| sucrose-phosphate synthase activity | 0.013317417 | GO:0046524 |
| chlorophyllide a oxygenase [overall] activity | 0.013317417 | GO:0010277 |
| RNA polymerase I transcription factor complex | 0.014133339 | GO:0000120 |
| sucrose synthase activity | 0.019010834 | GO:0016157 |
| cell death | 0.024170131 | GO:0008219 |
| protein N-linked glycosylation | 0.024170131 | GO:0006487 |
| fruit development | 0.024170131 | GO:0010154 |
| sucrose metabolic process | 0.024170131 | GO:0005985 |
| defense response to bacterium, incompatible interaction | 0.024170131 | GO:0009816 |
| chlorophyll catabolic process | 0.024170131 | GO:0015996 |
| oligosaccharyltransferase complex | 0.028241629 | GO:0008250 |
| chlorophyll a degradation II | 0.035684582 | plantCyc |
| phospholipid remodeling (phosphatidylcholine, yeast) | 0.035684582 | plantCyc |
| sucrose biosynthesis I (from photosynthesis) | 0.035684582 | plantCyc |
| sucrose biosynthesis II | 0.035684582 | plantCyc |
| phosphatidylcholine acyl editing | 0.036391523 | plantCyc |
| phospholipases | 0.036391523 | plantCyc |
| flower development | 0.039195335 | GO:0009908 |
| lipid catabolic process | 0.039195335 | GO:0016042 |
| N-Glycan biosynthesis | 0.046134715 | KEGG pathway |
| Porphyrin and chlorophyll metabolism | 0.046134715 | KEGG pathway |
| 2 iron, 2 sulfur cluster binding | 0.047365933 | GO:0051537 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000108 | AT5G18130 (3.00E-17) | unknown protein |
| CRO_T005896 | AT1G69800 (3.00E-146) | Cystathionine beta-synthase (CBS) protein |
| CRO_T008934 | AT1G06330 (0.0000009) | Heavy metal transport/detoxification superfamily protein |
| CRO_T010297 | AT3G17830 (1.00E-12) | DJA4|DNA J protein A4 |
| CRO_T014229 | AT2G26560 (9.00E-109) | PLA IIA|PHOSPHOLIPASE A 2A; PLP2|PATATIN-LIKE PROTEIN 2 |
| CRO_T014467 | AT1G04920 (0) | ATSPS3F|sucrose phosphate synthase 3F |
| CRO_T018778 | AT2G02955 (3.00E-123) | MEE12|maternal effect embryo arrest 12 |
| CRO_T019738 | - | - |
| CRO_T023677 | AT1G26330 (6.00E-46) | DNA binding |
| CRO_T027408 | AT4G21150 (1.00E-174) | HAP6|HAPLESS 6; RPN2|RIBOPHORIN II |
| CRO_T030557 | AT5G59400 (1.00E-91) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000490 | aspartate transport tryptophan transport neutral amino acid transport acidic amino acid transmembrane transporter activity neutral amino acid transmembrane transporter activity pheophytinase activity metabolic process chlorophyll a degradation II chlorophyll catabolic process sesaminol glucoside biosynthesis starch binding transferase activity, transferring hexosyl groups formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TissueCFM000616 | tryptophan synthase activity oxidation-reduction process tryptophan biosynthetic process ethylene biosynthesis I (plants) L-tryptophan biosynthesis flavonoid biosynthesis (in equisetum) pyridoxal phosphate binding Phenylpropanoid biosynthesis | details |
| TissueCFM000769 | histone-arginine N-methyltransferase activity histone arginine methylation [myelin basic protein]-arginine N-methyltransferase activity protein-arginine omega-N monomethyltransferase activity positive regulation of vernalization response peptidyl-arginine methylation, to symmetrical-dimethyl arginine Pentose phosphate pathway protein-arginine omega-N asymmetric methyltransferase activity ribokinase activity peptidyl-arginine methylation, to asymmetrical-dimethyl arginine response to high light intensity response to hydrogen peroxide D-ribose metabolic process protein N-linked glycosylation FoxO signaling pathway regulation of flower development base-excision repair carbohydrate phosphorylation vegetative to reproductive phase transition of meristem DNA recombination | details |
| TissueCFM000928 | molybdenum ion binding pyridoxal phosphate binding protein N-linked glycosylation sucrose metabolic process catalytic activity sucrose-phosphate synthase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: G2-like sucrose synthase activity oligosaccharyltransferase complex sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II N-Glycan biosynthesis Starch and sucrose metabolism | details |
| TissueCFM001109 | glycerol transport cellular water homeostasis water transport plasmodesma ion transmembrane transport | details |
| TissueCFM001229 | Ubiquitin_Proteasome_system, E1: ThiF Pentose phosphate pathway S-methyl-5-thio-α-D-ribose 1-phosphate degradation L-leucine biosynthesis L-leucine degradation I Renin-angiotensin system protein neddylation D-ribose metabolic process ribokinase activity dipeptidyl-peptidase activity acid-amino acid ligase activity NEDD8 activating enzyme activity ribosomal large subunit binding base-excision repair carbohydrate phosphorylation Base excision repair ribosome binding ATP binding serine-type carboxypeptidase activity | details |
| TissueCFM001492 | [myelin basic protein]-arginine N-methyltransferase activity 3'-5'-exodeoxyribonuclease activity protein-arginine omega-N monomethyltransferase activity nucleotide-excision repair, DNA gap filling DNA replication proofreading base-excision repair, gap-filling delta DNA polymerase complex oligosaccharyltransferase complex protein-arginine omega-N asymmetric methyltransferase activity histone-arginine N-methyltransferase activity peptidyl-arginine methylation, to asymmetrical-dimethyl arginine histone arginine methylation FoxO signaling pathway protein N-linked glycosylation DNA-directed DNA polymerase activity DNA binding DNA recombination DNA biosynthetic process vegetative to reproductive phase transition of meristem DNA replication N-Glycan biosynthesis DNA repair nucleic acid phosphodiester bond hydrolysis | details |
| TissueCFM001535 | oligosaccharyltransferase complex Cytochrome_P450, Cytochrome P450: CYP88A Transcription_related, Transcription factor: G2-like branched-chain amino acid biosynthetic process protein N-linked glycosylation 2-Oxocarboxylic acid metabolism Diterpenoid biosynthesis N-Glycan biosynthesis ethylene biosynthesis I (plants) flavonoid biosynthesis (in equisetum) flavonol biosynthesis GA12 biosynthesis L-valine biosynthesis syringetin biosynthesis tRNA modification negative regulation of catalytic activity acetolactate synthase activity | details |
| TissueCFM001558 | quinate O-hydroxycinnamoyltransferase activity pheophorbide a oxygenase activity cell death fruit development chlorophyllide a oxygenase [overall] activity defense response to bacterium, incompatible interaction chlorophyll catabolic process Porphyrin and chlorophyll metabolism chlorogenic acid biosynthesis II chlorophyll a degradation II flower development chlorogenic acid biosynthesis I Transcription_related, Transcription factor: MYB chloroplast thylakoid 2 iron, 2 sulfur cluster binding Phenylpropanoid biosynthesis chloroplast envelope | details |
| TissueCFM001563 | chlorophyll a degradation II pheophorbide a oxygenase activity nucleoside transmembrane transport fruit development cell death defense response to bacterium, incompatible interaction chlorophyllide a oxygenase [overall] activity nucleoside transmembrane transporter activity chlorophyll catabolic process Porphyrin and chlorophyll metabolism Zeatin biosynthesis flower development 2 iron, 2 sulfur cluster binding | details |
| TissueCFM001688 | ethylene biosynthesis I (plants) flavonoid biosynthesis (in equisetum) pheophorbide a oxygenase activity metal ion binding oxidation-reduction process cell death fruit development defense response to bacterium, incompatible interaction chlorophyll catabolic process chlorophyllide a oxygenase [overall] activity Porphyrin and chlorophyll metabolism flower development chlorophyll a degradation II Transcription_related, Transcription factor: MYB pinobanksin biosynthesis Flavonoid biosynthesis flavonol biosynthesis leucodelphinidin biosynthesis syringetin biosynthesis 2 iron, 2 sulfur cluster binding chloroplast thylakoid chloroplast inner membrane | details |
| TissueCFM001741 | DNA replication proofreading nucleotide-excision repair, DNA gap filling base-excision repair, gap-filling response to high light intensity 3'-5'-exodeoxyribonuclease activity delta DNA polymerase complex oligosaccharyltransferase complex protein N-linked glycosylation response to hydrogen peroxide 5S rRNA binding response to heat DNA biosynthetic process DNA-directed DNA polymerase activity nucleic acid phosphodiester bond hydrolysis | details |
| TissueCFM001848 | cAMP-dependent protein kinase activity acylglycerol lipase activity phospholipase activity 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity 9,9'-dicis-carotene:quinone oxidoreductase activity carotene 7,8-desaturase activity ion channel activity Carotenoid biosynthesis Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase trans-lycopene biosynthesis II (plants) neurosporene biosynthesis phospholipid remodeling (phosphatidylcholine, yeast) phosphatidylcholine acyl editing phospholipases 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene carotenoid biosynthetic process chromoplast lipid catabolic process cell surface receptor signaling pathway ion transmembrane transport polysaccharide binding | details |
Expression profiles
 Show details about module gene expression profiling |