TissueCFM001640's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Antigen processing and presentation | 0.005131975 | KEGG pathway |
| cell wall | 0.005589696 | GO:0005618 |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.010624943 | cazy family |
| cytoplasmic, membrane-bounded vesicle | 0.023431462 | GO:0016023 |
| plant-type cell wall organization | 0.027265933 | GO:0009664 |
| protein catabolic process | 0.027265933 | GO:0030163 |
| beta-galactosidase activity | 0.029513731 | GO:0004565 |
| aspartic-type endopeptidase activity | 0.033875656 | GO:0004190 |
| dioxygenase activity | 0.034489578 | GO:0051213 |
| carbohydrate binding | 0.034489578 | GO:0030246 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001392 | AT1G07080 (4.00E-54) | Thioredoxin superfamily protein |
| CRO_T008558 | - | - |
| CRO_T010260 | AT5G22850 (4.00E-25) | Eukaryotic aspartyl protease family protein |
| CRO_T026377 | AT1G31740 (0) | BGAL15|beta-galactosidase 15 |
| CRO_T030288 | AT4G25310 (6.00E-57) | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| CRO_T030555 | AT2G39700 (9.00E-130) | ATEXPA4|expansin A4 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000499 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc plant-type cell wall organization cellulose biosynthetic process guard cell differentiation protein catabolic process MAPK cascade cellulose catabolic process activation of MAPKK activity MAP kinase kinase kinase activity phosphoprotein phosphatase activity cellulose synthase (UDP-forming) activity aspartic-type endopeptidase activity cellulase activity | details |
| TissueCFM000733 | Transcription_related, Transcription factor: BBR-BPC L-valine degradation I non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 D-gluconate catabolic process Carbon metabolism gluconokinase activity receptor activity aldehyde dehydrogenase (NAD) activity malonate-semialdehyde dehydrogenase (acetylating) activity protein phosphatase inhibitor activity pectate lyase activity abscisic acid binding methylmalonate-semialdehyde dehydrogenase (acylating) activity regulation of protein serine/threonine phosphatase activity | details |
| TissueCFM000826 | Antigen processing and presentation Protein_kinases_phosphatases, PPC:4.1.6: Unknown Function Kinase adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc guard cell differentiation cellulase activity transcription cofactor activity cellulose catabolic process protein catabolic process aspartic-type endopeptidase activity membrane | details |
| TissueCFM000937 | cytoplasmic ubiquitin ligase complex trans, trans-farnesyl diphosphate biosynthesis geranylgeranyl diphosphate biosynthesis polyisoprenoid biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) Atg8 ligase activity Z-farnesyl diphosphate synthase activity actin filament-based process mitophagy farnesyl diphosphate biosynthetic process nucleophagy autophagosome assembly geranyltranstransferase activity non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 Transcription_related, Transcription factor: C2C2-GATA dimethylallyltranstransferase activity pectate lyase activity structural constituent of cytoskeleton Autophagy - animal Terpenoid backbone biosynthesis pectin catabolic process protein transport Pentose and glucuronate interconversions | details |
| TissueCFM001204 | 2-oxoglutarate decarboxylation to succinyl-CoA 2-oxoisovalerate decarboxylation to isobutanoyl-CoA glycine cleavage pyruvate decarboxylation to acetyl CoA Transcription_related, Transcription factor: DBP Transcription_related, Transcription factor: GRF | details |
| TissueCFM001292 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 cellulose catabolic process hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc cellulase activity Fatty acid elongation guard cell differentiation L-gulonolactone oxidase activity D-arabinono-1,4-lactone oxidase activity membrane | details |
| TissueCFM001499 | leucopelargonidin and leucocyanidin biosynthesis phosphoprotein binding Transcription_related, Transcription factor: HB lipid binding dioxygenase activity | details |
| TissueCFM001576 | pyruvate decarboxylation to acetyl CoA tyrosine catabolic process homogentisate catabolic process actin filament-based process homogentisate 1,2-dioxygenase activity Atg8 ligase activity nucleophagy L-phenylalanine catabolic process mitophagy cytoplasmic ubiquitin ligase complex autophagosome assembly Autophagy - animal Tyrosine metabolism Transcription_related, Transcription factor: C2C2-GATA cytosolic ribosome structural constituent of cytoskeleton | details |
| TissueCFM001579 | Transcription_related, Transcription factor: BBR-BPC Transcription_related, Transcription factor: NF-YC L-valine degradation I RIG-I-like receptor signaling pathway phosphoprotein binding malonate-semialdehyde dehydrogenase (acetylating) activity methylmalonate-semialdehyde dehydrogenase (acylating) activity receptor activity abscisic acid binding protein phosphatase inhibitor activity aldehyde dehydrogenase (NAD) activity glutathione metabolic process abscisic acid-activated signaling pathway RNA secondary structure unwinding regulation of protein serine/threonine phosphatase activity negative regulation of catalytic activity Glutathione metabolism | details |
| TissueCFM001613 | cytoplasmic ubiquitin ligase complex hydroxymethylglutaryl-CoA synthase activity Atg8 ligase activity Z-farnesyl diphosphate synthase activity geranyltranstransferase activity autophagosome assembly farnesyl diphosphate biosynthetic process nucleophagy mitophagy trans, trans-farnesyl diphosphate biosynthesis geranylgeranyl diphosphate biosynthesis mevalonate pathway I polyisoprenoid biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) dimethylallyltranstransferase activity Autophagy - animal Butanoate metabolism isoprenoid biosynthetic process Terpenoid backbone biosynthesis protein transport Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TissueCFM001639 | L-cysteine biosynthesis I formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc plant-type cell wall organization cellular amino acid biosynthetic process cysteine biosynthetic process from serine cell wall cysteine synthase activity beta-galactosidase activity | details |
| TissueCFM001657 | leucopelargonidin and leucocyanidin biosynthesis phosphoprotein binding Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase Transcription_related, Transcription factor: HB water transport glycerol transport cellular water homeostasis glycerol channel activity water channel activity ion transmembrane transport lipid binding | details |
| TissueCFM001820 | pyruvate decarboxylation to acetyl CoA Carbon metabolism transferase activity, transferring acyl groups formate dehydrogenase (NAD+) activity Atg8 ligase activity homogentisate 1,2-dioxygenase activity phosphoglycerate dehydrogenase activity tyrosine catabolic process homogentisate catabolic process serine family amino acid biosynthetic process formate catabolic process Tyrosine metabolism L-phenylalanine catabolic process nucleophagy mitophagy cytoplasmic ubiquitin ligase complex Autophagy - animal autophagosome assembly cytosolic ribosome cytosol chloroplast part protein transport NAD binding dioxygenase activity | details |
Expression profiles
 Show details about module gene expression profiling |