TissueCFM001826's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription regulator: Jumonji | 0.009563862 | TF family |
| response to stress | 0.015099213 | GO:0006950 |
| single-organism metabolic process | 0.015099213 | GO:0044710 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.019577886 | cazy family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002040 | AT1G53040 (2.00E-164) | Protein of unknown function (DUF616) |
| CRO_T018529 | AT1G63490 (3.00E-53) | transcription factor jumonji (jmjC) domain-containing protein |
| CRO_T020895 | AT5G53620 (1.00E-146) | unknown protein |
| CRO_T026179 | AT1G68300 (3.00E-21) | Adenine nucleotide alpha hydrolases-like superfamily protein |
| CRO_T029653 | AT1G76980 (1.00E-23) | |
| CRO_T029985 | AT5G10730 (2.00E-20) | NAD(P)-binding Rossmann-fold superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000444 | actin filament-based process ubiquinone biosynthetic process non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 Ubiquitin_Proteasome_system, DUB: OTU pectate lyase activity structural constituent of cytoskeleton Thiamine metabolism Lysosome pectin catabolic process single-organism metabolic process lipid binding Pentose and glucuronate interconversions | details |
| TissueCFM001017 | endopeptidase activity anaphase-promoting complex binding ubiquitin-protein transferase activator activity SNAP receptor activity SNARE binding Ubiquitin mediated proteolysis regulation of catalytic activity vesicle fusion vesicle docking Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TissueCFM001018 | vesicle fusion vesicle docking SNARE binding SNAP receptor activity intracellular protein transport Protein processing in endoplasmic reticulum | details |
| TissueCFM001302 | Sulfur relay system molybdenum cofactor biosynthesis Transcription_related, Transcription regulator: Jumonji early endosome membrane molybdopterin synthase complex molybdenum incorporation into molybdenum-molybdopterin complex negative regulation of histone acetylation histone H3-K9 demethylation response to brassinosteroid molybdopterin synthase activity vacuole organization Mo-molybdopterin cofactor biosynthetic process protein targeting to vacuole leaf development vegetative to reproductive phase transition of meristem unidimensional cell growth vesicle fusion auxin-activated signaling pathway exocytosis ER to Golgi vesicle-mediated transport SNAP receptor activity SNARE binding SNARE complex | details |
| TissueCFM001368 | transferase activity, transferring hexosyl groups formation of glycosidic bonds, GlycosylTransferases: GTnc translational termination translation release factor activity, codon specific protein N-glycosylation (eukaryotic, high mannose) sesaminol glucoside biosynthesis triacylglycerol degradation | details |
| TissueCFM001434 | uracil degradation I (reductive) beta-ureidopropionase activity uracil catabolic process CIA complex iron-sulfur cluster assembly Pyrimidine metabolism Plant-pathogen interaction transferase activity, transferring acyl groups Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TissueCFM001692 | tissue development regulation of response to stimulus anatomical structure morphogenesis cellular response to stimulus plant organ development response to organic substance response to bacterium Transcription_related, Transcription factor: MYB-related Ubiquitin_Proteasome_system, DUB: USP response to osmotic stress defense response to other organism cellular protein metabolic process maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ABC transporters | details |
| TissueCFM001718 | ESCRT I complex transcription factor TFIID complex C-5 methylation of cytosine protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway RNA polymerase II transcriptional preinitiation complex assembly histone acetyltransferase binding DNA (cytosine-5-)-methyltransferase activity protein complex binding transcription factor binding transcription coactivator activity transcription regulatory region DNA binding Cellular senescence regulation of transcription from RNA polymerase II promoter chromatin binding Basal transcription factors Cysteine and methionine metabolism Endocytosis | details |
| TissueCFM001733 | leaf development Ubiquitin_Proteasome_system, DUB: UCH shoot system morphogenesis histone H3-K9 demethylation negative regulation of histone acetylation response to brassinosteroid Transcription_related, Transcription regulator: Jumonji vesicle docking protein deubiquitination vegetative to reproductive phase transition of meristem unidimensional cell growth cellular metabolic process organic substance metabolic process vesicle fusion thiol-dependent ubiquitin-specific protease activity | details |
| TissueCFM001763 | N-acetyltransferase activity N-terminal protein amino acid acetylation U5 snRNP Transcription_related, Transcription regulator: GNAT Transcription_related, Transcription regulator: Jumonji mRNA surveillance pathway formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TissueCFM001810 | Peroxisome protein import into peroxisome matrix fatty acid beta-oxidation queuosine biosynthetic process peroxisome organization Transcription_related, Transcription factor: G2-like Transcription_related, Transcription factor: NF-YB Transcription_related, Transcription regulator: Jumonji queuine tRNA-ribosyltransferase activity histone binding serine-type peptidase activity formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
Expression profiles
 Show details about module gene expression profiling |