TreatCFM000176's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.010547888 | cazy family |
| Transcription_related, Transcription factor: ARF | 0.010547888 | TF family |
| Transcription_related, Transcription factor: LOB | 0.01780288 | TF family |
| Glycosylphosphatidylinositol(GPI)-anchor biosynthesis | 0.022093164 | KEGG pathway |
| glucuronosyltransferase activity | 0.022470907 | GO:0015020 |
| phosphomannomutase activity | 0.022470907 | GO:0004615 |
| acyl-CoA hydrolysis | 0.023525585 | plantCyc |
| GDP-glucose biosynthesis | 0.023525585 | plantCyc |
| GDP-mannose biosynthesis | 0.023525585 | plantCyc |
| glucose and glucose-1-phosphate degradation | 0.023525585 | plantCyc |
| UDP-glucose biosynthesis | 0.023525585 | plantCyc |
| L-ascorbate biosynthesis I (L-galactose pathway) | 0.030579379 | plantCyc |
| starch biosynthesis | 0.030579379 | plantCyc |
| sucrose biosynthesis II | 0.030579379 | plantCyc |
| acetylglucosaminyltransferase activity | 0.036838044 | GO:0008375 |
| iron-sulfur cluster binding | 0.036838044 | GO:0051536 |
| cutin biosynthesis | 0.038003797 | plantCyc |
| sporopollenin precursors biosynthesis | 0.038092127 | plantCyc |
| suberin monomers biosynthesis | 0.047852681 | plantCyc |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001183 | AT1G01030 (1.00E-09) | NGA3|NGATHA3 |
| CRO_T007963 | AT5G17530 (0) | phosphoglucosamine mutase family protein |
| CRO_T008131 | AT2G30130 (2.00E-37) | PCK1|PEACOCK 1 |
| CRO_T008229 | AT5G64200 (1.00E-10) | At-SC35|ortholog of human splicing factor SC35 |
| CRO_T009000 | AT1G12730 (2.00E-31) | GPI transamidase subunit PIG-U |
| CRO_T019666 | - | - |
| CRO_T024580 | AT4G01940 (6.00E-18) | NFU1|NFU domain protein 1 |
| CRO_T025826 | AT2G30720 (4.00E-144) | Thioesterase/thiol ester dehydrase-isomerase superfamily protein |
| CRO_T025896 | AT2G37585 (2.00E-134) | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein |
| CRO_T026497 | AT1G34520 (2.00E-63) | MBOAT (membrane bound O-acyl transferase) family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000395 | Circadian rhythm - plant positive regulation of long-day photoperiodism, flowering temperature compensation of the circadian clock response to far red light response to blue light Circadian rhythm response to hydrogen peroxide response to cold nucleoplasm negative regulation of transcription from RNA polymerase II promoter receptor-mediated endocytosis Fluorobenzoate degradation Cytochrome_P450, Cytochrome P450: CYP75B Transcription_related, Transcription factor: NF-X1 Transcription_related, Transcription regulator: Pseudo ARR-B transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding scavenger receptor activity | details |
| TreatCFM000431 | actin cytoskeleton actin filament depolymerization Regulation of actin cytoskeleton defense response protein folding actin binding unfolded protein binding transferase activity, transferring acyl groups | details |
| TreatCFM000662 | Cytochrome_P450, Cytochrome P450: CYP75B costunolide biosynthesis gossypetin metabolism luteolin biosynthesis flavonol biosynthesis Cytochrome_P450, Cytochrome P450: CYP71B Transcription_related, Transcription factor: LOB mitochondrial translation Golgi vesicle transport mitochondrial large ribosomal subunit vesicle docking SNARE complex vesicle fusion endomembrane system Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII | details |
| TreatCFM001166 | Cytochrome_P450, Cytochrome P450: CYP78A formation of glycosidic bonds, GlycosylTransferases: GTnc programmed cell death metabolic process gossypetin metabolism leucopelargonidin and leucocyanidin biosynthesis luteolin biosynthesis flavonoid biosynthesis (in equisetum) flavonol biosynthesis leucodelphinidin biosynthesis syringetin biosynthesis glucuronosyltransferase activity Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII protein catabolic process acetylglucosaminyltransferase activity aspartic-type endopeptidase activity | details |
| TreatCFM001305 | Ubiquitin_Proteasome_system, DUB: JAMM regulation of root morphogenesis adenosine ribonucleotides de novo biosynthesis actin filament depolymerization response to hormone actin cytoskeleton ATP synthesis coupled proton transport proton-transporting ATP synthase complex, catalytic core F(1) AMPK signaling pathway Regulation of actin cytoskeleton proton-transporting ATP synthase activity, rotational mechanism proton-transporting ATPase activity, rotational mechanism actin binding | details |
| TreatCFM001641 | Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV glutaminyl-tRNAgln biosynthesis via transamidation Transcription_related, Transcription regulator: LIM homogalacturonan biosynthesis isoflavonoid biosynthesis II pectin biosynthetic process spliceosomal snRNP assembly G-protein coupled receptor signaling pathway oligopeptide transport formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase | details |
| TreatCFM001700 | Protein_kinases_phosphatases, PPC:2.1.3: CTR1/EDR1 Kinase pyrimidine nucleotide biosynthetic process 'de novo' pyrimidine nucleobase biosynthetic process nucleotide phosphorylation iron-sulfur cluster assembly acyl-CoA hydrolysis CMP phosphorylation pyrimidine deoxyribonucleotide phosphorylation UTP and CTP de novo biosynthesis cytidylate kinase activity uridylate kinase activity cutin biosynthesis pyrimidine ribonucleotides interconversion sporopollenin precursors biosynthesis suberin monomers biosynthesis Pyrimidine metabolism iron-sulfur cluster binding | details |
| TreatCFM001856 | uracil degradation I (reductive) N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity beta-ureidopropionase activity Protein_kinases_phosphatases, PPC:1.3.3: Leucine Rich Repeat Receptor Kinase I & Unknown Receptor Kinase I Transcription_related, Transcription factor: ARF lysophospholipase activity palmitoyl-(protein) hydrolase activity uracil catabolic process protein depalmitoylation Other glycan degradation response to hormone Glycerophospholipid metabolism NF-kappa B signaling pathway Pyrimidine metabolism single-organism cellular process regulation of cellular process | details |
| TreatCFM001989 | Protein_kinases_phosphatases, PPC:2.1.3: CTR1/EDR1 Kinase CMP phosphorylation flavin biosynthesis I (bacteria and plants) pyrimidine deoxyribonucleotide phosphorylation UTP and CTP de novo biosynthesis pyrimidine nucleotide biosynthetic process nucleotide phosphorylation 'de novo' pyrimidine nucleobase biosynthetic process iron-sulfur cluster assembly cytidylate kinase activity uridylate kinase activity Riboflavin metabolism Pyrimidine metabolism pyrimidine ribonucleotides interconversion iron-sulfur cluster binding MAPK signaling pathway - plant transmembrane transporter activity | details |
| TreatCFM002059 | red chlorophyll catabolite reductase activity phosphomannomutase activity carbohydrate phosphatase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Transcription_related, Transcription regulator: LIM regulation of plant-type hypersensitive response defense response, incompatible interaction starch metabolic process protein tyrosine/serine/threonine phosphatase activity phosphate ion transport Circadian rhythm chlorophyll catabolic process chlorophyll a degradation II GDP-glucose biosynthesis GDP-mannose biosynthesis glucose and glucose-1-phosphate degradation starch degradation II UDP-glucose biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) starch biosynthesis sucrose biosynthesis II Porphyrin and chlorophyll metabolism ER to Golgi vesicle-mediated transport | details |
| TreatCFM002119 | flavin biosynthesis I (bacteria and plants) Insulin secretion 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity regulation of lipid metabolic process Riboflavin metabolism ubiquinone biosynthetic process Ubiquinone and other terpenoid-quinone biosynthesis extrinsic component of mitochondrial inner membrane iron-sulfur cluster assembly iron-sulfur cluster binding transmembrane transporter activity | details |
| TreatCFM002128 | anthocyanidin modification (Arabidopsis) Herpes simplex infection Fanconi anemia pathway ether hydrolase activity myosin heavy chain kinase activity | details |
Expression profiles
 Show details about module gene expression profiling |