TreatCFM002059's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| red chlorophyll catabolite reductase activity | 0.004290463 | GO:0051743 |
| phosphomannomutase activity | 0.004290463 | GO:0004615 |
| carbohydrate phosphatase activity | 0.004290463 | GO:0019203 |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.006820695 | cazy family |
| Transcription_related, Transcription regulator: LIM | 0.006820695 | TF family |
| regulation of plant-type hypersensitive response | 0.006923763 | GO:0010363 |
| defense response, incompatible interaction | 0.006923763 | GO:0009814 |
| starch metabolic process | 0.006923763 | GO:0005982 |
| protein tyrosine/serine/threonine phosphatase activity | 0.008844504 | GO:0008138 |
| phosphate ion transport | 0.009343627 | GO:0006817 |
| Circadian rhythm | 0.009343627 | KEGG pathway |
| chlorophyll catabolic process | 0.009515251 | GO:0015996 |
| chlorophyll a degradation II | 0.010524834 | plantCyc |
| GDP-glucose biosynthesis | 0.010524834 | plantCyc |
| GDP-mannose biosynthesis | 0.010524834 | plantCyc |
| glucose and glucose-1-phosphate degradation | 0.010524834 | plantCyc |
| starch degradation II | 0.010524834 | plantCyc |
| UDP-glucose biosynthesis | 0.010524834 | plantCyc |
| L-ascorbate biosynthesis I (L-galactose pathway) | 0.012396939 | plantCyc |
| starch biosynthesis | 0.012396939 | plantCyc |
| sucrose biosynthesis II | 0.012519385 | plantCyc |
| Porphyrin and chlorophyll metabolism | 0.023333464 | KEGG pathway |
| ER to Golgi vesicle-mediated transport | 0.028856719 | GO:0006888 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007963 | AT5G17530 (0) | phosphoglucosamine mutase family protein |
| CRO_T008229 | AT5G64200 (1.00E-10) | At-SC35|ortholog of human splicing factor SC35 |
| CRO_T011991 | AT1G10200 (2.00E-54) | WLIM1|WLIM1 |
| CRO_T013368 | AT3G52180 (2.00E-89) | DSP4|DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4; SEX4|STARCH-EXCESS 4 |
| CRO_T016146 | - | - |
| CRO_T018302 | AT4G37000 (2.00E-67) | ACD2|ACCELERATED CELL DEATH 2; ATRCCR|RED CHLOROPHYLL CATABOLITE REDUCTASE |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000176 | formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: ARF Transcription_related, Transcription factor: LOB Glycosylphosphatidylinositol(GPI)-anchor biosynthesis glucuronosyltransferase activity phosphomannomutase activity acyl-CoA hydrolysis GDP-glucose biosynthesis GDP-mannose biosynthesis glucose and glucose-1-phosphate degradation UDP-glucose biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) starch biosynthesis sucrose biosynthesis II acetylglucosaminyltransferase activity iron-sulfur cluster binding cutin biosynthesis sporopollenin precursors biosynthesis suberin monomers biosynthesis | details |
| TreatCFM000349 | benzoyl-CoA biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: BES1 Transcription_related, Transcription regulator: LIM Ubiquitin_Proteasome_system, DUB: JAMM glycoprotein 2-beta-D-xylosyltransferase activity fatty acid β-oxidation II (peroxisome) transcription factor activity, sequence-specific DNA binding transcription regulatory region DNA binding benzoate biosynthesis I (CoA-dependent, β-oxidative) protein N-linked glycosylation formation of translation preinitiation complex regulation of transcription, DNA-templated carbohydrate transport regulation of translational initiation brassinosteroid mediated signaling pathway | details |
| TreatCFM000431 | actin cytoskeleton actin filament depolymerization Regulation of actin cytoskeleton defense response protein folding actin binding unfolded protein binding transferase activity, transferring acyl groups | details |
| TreatCFM001161 | Transcription_related, Transcription regulator: LIM glycolysis I (from glucose 6-phosphate) Transcription_related, Transcription factor: C2H2 | details |
| TreatCFM001293 | Transcription_related, Transcription regulator: LIM Ubiquitin_Proteasome_system, E3 adaptor: Cullin cullin-RING ubiquitin ligase complex Sphingolipid metabolism carbohydrate transport protein ubiquitination involved in ubiquitin-dependent protein catabolic process ubiquitin protein ligase binding ubiquitin protein ligase activity | details |
| TreatCFM001298 | 3R-hydroxyacyl-CoA dehydratase activity fatty acid beta-oxidation, unsaturated, even number Transcription_related, Transcription regulator: LIM carbohydrate transport arachidonate biosynthesis IV (8-detaturase, lower eukaryotes) unsaturated, even numbered fatty acid β-oxidation very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II Peroxisome | details |
| TreatCFM001641 | Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV glutaminyl-tRNAgln biosynthesis via transamidation Transcription_related, Transcription regulator: LIM homogalacturonan biosynthesis isoflavonoid biosynthesis II pectin biosynthetic process spliceosomal snRNP assembly G-protein coupled receptor signaling pathway oligopeptide transport formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase | details |
| TreatCFM001663 | Transcription_related, Transcription regulator: LIM FAD binding plastoglobule oxidation-reduction process secondary metabolite biosynthetic process | details |
| TreatCFM001700 | Protein_kinases_phosphatases, PPC:2.1.3: CTR1/EDR1 Kinase pyrimidine nucleotide biosynthetic process 'de novo' pyrimidine nucleobase biosynthetic process nucleotide phosphorylation iron-sulfur cluster assembly acyl-CoA hydrolysis CMP phosphorylation pyrimidine deoxyribonucleotide phosphorylation UTP and CTP de novo biosynthesis cytidylate kinase activity uridylate kinase activity cutin biosynthesis pyrimidine ribonucleotides interconversion sporopollenin precursors biosynthesis suberin monomers biosynthesis Pyrimidine metabolism iron-sulfur cluster binding | details |
| TreatCFM001804 | Ubiquitin_Proteasome_system, DUB: JAMM Transcription_related, Transcription regulator: LIM formation of translation preinitiation complex regulation of translational initiation eukaryotic 48S preinitiation complex eukaryotic translation initiation factor 3 complex proteasome complex eukaryotic 43S preinitiation complex proteasome-mediated ubiquitin-dependent protein catabolic process Homologous recombination Proteasome RNA transport | details |
| TreatCFM001841 | Transcription_related, Transcription regulator: LIM imidazoleglycerol-phosphate dehydratase activity L-histidine biosynthesis plant sterol biosynthesis histidine biosynthetic process anion transport FAD binding Steroid biosynthesis plastoglobule Biosynthesis of amino acids transmembrane transporter activity | details |
| TreatCFM002048 | formation of glycosidic bonds, GlycosylTransferases: GTnc chlorophyll a degradation II uracil degradation I (reductive) cytosol red chlorophyll catabolite reductase activity beta-ureidopropionase activity glycogen phosphorylase activity rRNA (uridine-N3-)-methyltransferase activity glycogen catabolic process regulation of plant-type hypersensitive response uracil catabolic process defense response, incompatible interaction cellular response to gravity tubulin complex chloroplast stroma response to cadmium ion rRNA base methylation chlorophyll catabolic process microtubule-based process Phagosome structural constituent of cytoskeleton Porphyrin and chlorophyll metabolism Pyrimidine metabolism amyloplast protein catabolic process response to water deprivation identical protein binding aspartic-type endopeptidase activity Starch and sucrose metabolism | details |
| TreatCFM002128 | anthocyanidin modification (Arabidopsis) Herpes simplex infection Fanconi anemia pathway ether hydrolase activity myosin heavy chain kinase activity | details |
Expression profiles
 Show details about module gene expression profiling |