TreatCFM002128's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| anthocyanidin modification (Arabidopsis) | 0.003069746 | plantCyc |
| Herpes simplex infection | 0.004253496 | KEGG pathway |
| Fanconi anemia pathway | 0.009196865 | KEGG pathway |
| ether hydrolase activity | 0.010280159 | GO:0016803 |
| myosin heavy chain kinase activity | 0.020547561 | GO:0016905 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007034 | AT2G41600 (2.00E-36) | Mitochondrial glycoprotein family protein |
| CRO_T008229 | AT5G64200 (1.00E-10) | At-SC35|ortholog of human splicing factor SC35 |
| CRO_T008559 | AT2G15320 (1.00E-19) | Leucine-rich repeat (LRR) family protein |
| CRO_T016013 | AT3G05090 (0) | LRS1|LATERAL ROOT STIMULATOR 1 |
| CRO_T023125 | AT5G54010 (2.00E-133) | UDP-Glycosyltransferase superfamily protein |
| CRO_T023241 | AT4G02340 (5.00E-49) | alpha/beta-Hydrolases superfamily protein |
| CRO_T023722 | AT2G40600 (4.00E-38) | appr-1-p processing enzyme family protein |
| CRO_T032762 | AT3G07790 (5.00E-10) | DGCR14-related |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000028 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds vacuolar proton-transporting V-type ATPase complex assembly nitrogen compound metabolic process retrograde transport, endosome to Golgi endoplasmic reticulum-Golgi intermediate compartment membrane | details |
| TreatCFM000176 | formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: ARF Transcription_related, Transcription factor: LOB Glycosylphosphatidylinositol(GPI)-anchor biosynthesis glucuronosyltransferase activity phosphomannomutase activity acyl-CoA hydrolysis GDP-glucose biosynthesis GDP-mannose biosynthesis glucose and glucose-1-phosphate degradation UDP-glucose biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) starch biosynthesis sucrose biosynthesis II acetylglucosaminyltransferase activity iron-sulfur cluster binding cutin biosynthesis sporopollenin precursors biosynthesis suberin monomers biosynthesis | details |
| TreatCFM000431 | actin cytoskeleton actin filament depolymerization Regulation of actin cytoskeleton defense response protein folding actin binding unfolded protein binding transferase activity, transferring acyl groups | details |
| TreatCFM000533 | PI3K-Akt signaling pathway Transcription_related, Transcription factor: CAMTA TORC1 complex TOR signaling organophosphate ester transport organic phosphonate transport transmembrane transport plasma membrane | details |
| TreatCFM000637 | Amyotrophic lateral sclerosis (ALS) mitochondrial outer membrane translocase complex protein import into mitochondrial matrix vacuolar transport NLS-bearing protein import into nucleus base-excision repair DNA N-glycosylase activity nucleoplasm nuclear pore Base excision repair Lysosome regulation of catalytic activity nuclear localization sequence binding protein channel activity cysteine-type endopeptidase activity protein transporter activity Endocytosis | details |
| TreatCFM001272 | phosphatidylethanolamine biosynthesis II ethanolamine-phosphate cytidylyltransferase activity peptide metabolic process Noc complex integral component of mitochondrial outer membrane nuclear lumen | details |
| TreatCFM001310 | L-cysteine biosynthesis I transmembrane transport cysteine biosynthetic process from serine organophosphate ester transport organic phosphonate transport Ascorbate and aldarate metabolism cytoplasm plasma membrane cellular amino acid biosynthetic process monodehydroascorbate reductase (NADH) activity organic phosphonate transmembrane-transporting ATPase activity cysteine synthase activity cell redox homeostasis | details |
| TreatCFM001577 | quercetin sulfate biosynthesis aerobic respiration I (cytochrome c) Fanconi anemia pathway Ubiquitin_Proteasome_system, E3: RING ubiquinol-cytochrome-c reductase activity P-P-bond-hydrolysis-driven protein transmembrane transporter activity sulfotransferase activity myosin heavy chain kinase activity | details |
| TreatCFM001641 | Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV glutaminyl-tRNAgln biosynthesis via transamidation Transcription_related, Transcription regulator: LIM homogalacturonan biosynthesis isoflavonoid biosynthesis II pectin biosynthetic process spliceosomal snRNP assembly G-protein coupled receptor signaling pathway oligopeptide transport formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase | details |
| TreatCFM001700 | Protein_kinases_phosphatases, PPC:2.1.3: CTR1/EDR1 Kinase pyrimidine nucleotide biosynthetic process 'de novo' pyrimidine nucleobase biosynthetic process nucleotide phosphorylation iron-sulfur cluster assembly acyl-CoA hydrolysis CMP phosphorylation pyrimidine deoxyribonucleotide phosphorylation UTP and CTP de novo biosynthesis cytidylate kinase activity uridylate kinase activity cutin biosynthesis pyrimidine ribonucleotides interconversion sporopollenin precursors biosynthesis suberin monomers biosynthesis Pyrimidine metabolism iron-sulfur cluster binding | details |
| TreatCFM001861 | post-embryonic root development ether hydrolase activity Adherens junction xyloglucan biosynthesis PPAR signaling pathway MAPK signaling pathway - yeast protein domain specific binding formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E2: UBC | details |
| TreatCFM001974 | fatty acid biosynthesis (plant mitochondria) anthocyanidin modification (Arabidopsis) ubiquitin-protein transferase activator activity anaphase-promoting complex binding Fatty acid metabolism Ubiquitin mediated proteolysis flavonoid biosynthetic process flavonoid glucuronidation regulation of catalytic activity fatty acid biosynthetic process cell division | details |
| TreatCFM002029 | Transcription_related, Transcription regulator: TRAF Ubiquitin_Proteasome_system, E3 adaptor: BTB Plant hormone signal transduction Spliceosome | details |
| TreatCFM002059 | red chlorophyll catabolite reductase activity phosphomannomutase activity carbohydrate phosphatase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Transcription_related, Transcription regulator: LIM regulation of plant-type hypersensitive response defense response, incompatible interaction starch metabolic process protein tyrosine/serine/threonine phosphatase activity phosphate ion transport Circadian rhythm chlorophyll catabolic process chlorophyll a degradation II GDP-glucose biosynthesis GDP-mannose biosynthesis glucose and glucose-1-phosphate degradation starch degradation II UDP-glucose biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) starch biosynthesis sucrose biosynthesis II Porphyrin and chlorophyll metabolism ER to Golgi vesicle-mediated transport | details |
| TreatCFM002076 | eukaryotic translation initiation factor 2B complex SCF ubiquitin ligase complex proteasome complex S-methyl-5-thioribose-1-phosphate isomerase activity myosin heavy chain kinase activity guanyl-nucleotide exchange factor activity simple leaf morphogenesis regulation of auxin mediated signaling pathway L-methionine biosynthetic process from methylthioadenosine SCF-dependent proteasomal ubiquitin-dependent protein catabolic process leaf vascular tissue pattern formation Fanconi anemia pathway Proteasome regulation of translational initiation positive regulation of GTPase activity translational initiation RNA transport translation initiation factor activity 2-alkenal reductase [NAD(P)] activity | details |
| TreatCFM002115 | 2-alkenal reductase [NAD(P)] activity anthocyanidin modification (Arabidopsis) proteasome complex Proteasome Transcription_related, Transcription factor: bZIP Transcription_related, Transcription factor: C2H2 | details |
Expression profiles
 Show details about module gene expression profiling |