TreatCFM000342's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| integral component of membrane | 0.003072046 | GO:0016021 |
| chloroplast inner membrane | 0.009739531 | GO:0009706 |
| ATP synthesis coupled electron transport | 0.019175422 | GO:0042773 |
| photosynthesis, light reaction | 0.019175422 | GO:0019684 |
| hydrogen ion transmembrane transporter activity | 0.029513731 | GO:0015078 |
| quinone binding | 0.031673393 | GO:0048038 |
| carbohydrate binding | 0.031937713 | GO:0030246 |
| NADH dehydrogenase (ubiquinone) activity | 0.031937713 | GO:0008137 |
| hydrogen ion transmembrane transport | 0.034793243 | GO:1902600 |
| Photosynthesis | 0.048615471 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002260 | - | - |
| CRO_T005266 | AT2G25310 (3.00E-46) | Protein of unknown function (DUF2012) |
| CRO_T006043 | - | - |
| CRO_T010373 | ATCG00540 (3.00E-52) | PETA|photosynthetic electron transfer A |
| CRO_T013629 | AT1G22460 (2.00E-12) | O-fucosyltransferase family protein |
| CRO_T015724 | AT3G55350 (4.00E-24) | PIF / Ping-Pong family of plant transposases |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000015 | allantoin degradation to glyoxylate II allantoin degradation to ureidoglycolate II (ammonia producing) phytol salvage pathway | details |
| TreatCFM000036 | adenosylmethionine decarboxylase activity spermidine biosynthetic process spermine biosynthetic process spermidine biosynthesis I spermine biosynthesis Cysteine and methionine metabolism Transcription_related, Transcription factor: NAC | details |
| TreatCFM000099 | Spliceosome sulfate activation for sulfonation sulfate reduction II (assimilatory) Transcription_related, Transcription factor: NAC Ubiquitin_Proteasome_system, DUB: JAMM HTLV-I infection L-valine degradation I | details |
| TreatCFM000100 | Transcription_related, Transcription factor: WRKY Galactose metabolism | details |
| TreatCFM000101 | ajmaline and sarpagine biosynthesis RNA-dependent DNA biosynthetic process RNA-directed DNA polymerase activity Transcription_related, Transcription factor: C2H2 DNA integration DNA recombination | details |
| TreatCFM000102 | RNA-dependent DNA biosynthetic process RNA-directed DNA polymerase activity DNA integration DNA recombination aspartic-type endopeptidase activity | details |
| TreatCFM000135 | Photosynthesis plastid chloroplast photosystem II reaction center Mpp10 complex photosynthetic electron transport chain viral nucleocapsid photosystem I snoRNA binding rRNA binding chloroplast thylakoid membrane | details |
| TreatCFM000166 | D-aminoacyl-tRNA deacylase activity D-amino acid catabolic process | details |
| TreatCFM000183 | calcium ion transport Ubiquitin_Proteasome_system, DUB: JAMM Proteasome proteasome-mediated ubiquitin-dependent protein catabolic process proteasome complex | details |
| TreatCFM000187 | intracellular part response to biotic stimulus defense response Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TreatCFM000188 | Basal transcription factors Ubiquitin_Proteasome_system, E3 adaptor: DWD catalytic activity | details |
| TreatCFM000195 | carbohydrate binding | details |
| TreatCFM000279 | Ubiquitin_Proteasome_system, DUB: JAMM Golgi vesicle budding phospholipid translocation Proteasome phospholipid-translocating ATPase activity proteasome-mediated ubiquitin-dependent protein catabolic process proteasome complex | details |
| TreatCFM000333 | details | |
| TreatCFM000334 | L-amino acid transport L-alpha-amino acid transmembrane transport L-amino acid transmembrane transporter activity protein disulfide isomerase activity antiporter activity cell redox homeostasis | details |
| TreatCFM000335 | chromosome organization DNA metabolic process helicase activity | details |
| TreatCFM000369 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP carbohydrate binding | details |
| TreatCFM000385 | xyloglucan biosynthetic process endomembrane system organization fucose biosynthetic process | details |
| TreatCFM000403 | Ubiquitin_Proteasome_system, DUB: JAMM proteasome complex Proteasome proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM000415 | 3'-5'-exoribonuclease activity U6 snRNA 3'-end processing mRNA processing RNA splicing RNA phosphodiester bond hydrolysis, exonucleolytic ion transport single-organism process | details |
| TreatCFM000428 | PcG protein complex copper uptake transmembrane transporter activity regulation of gene expression by genetic imprinting cellular metal ion homeostasis negative regulation of molecular function, epigenetic Lysine degradation single-stranded RNA binding protein import into chloroplast stroma DNA mediated transformation histone methylation copper ion transmembrane transport chloroplast inner membrane leaf morphogenesis vegetative to reproductive phase transition of meristem | details |
| TreatCFM000563 | DNA mediated transformation Transcription_related, Transcription factor: WRKY amino acid transmembrane transport Viral carcinogenesis MAPK signaling pathway - plant | details |
| TreatCFM000622 | serine-type carboxypeptidase activity | details |
| TreatCFM000635 | DNA mediated transformation Viral carcinogenesis | details |
| TreatCFM000644 | carbohydrate binding | details |
| TreatCFM000645 | carbohydrate binding | details |
| TreatCFM000699 | cell death L-amino acid transport leaf senescence L-alpha-amino acid transmembrane transport ethylene biosynthetic process L-amino acid transmembrane transporter activity protein disulfide isomerase activity Spliceosome Ubiquitin_Proteasome_system, E3 adaptor: F-box cell redox homeostasis defense response viral nucleocapsid cell intracellular ribonucleoprotein complex antiporter activity | details |
| TreatCFM000701 | endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) small-subunit processome assembly endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Ubiquitin_Proteasome_system, DUB: OTU | details |
| TreatCFM000769 | carbohydrate binding | details |
| TreatCFM000863 | mRNA surveillance pathway | details |
| TreatCFM001059 | quercetin 7-O-glucosyltransferase activity quercetin 3-O-glucosyltransferase activity flavonoid biosynthetic process flavonoid glucuronidation | details |
| TreatCFM001194 | formation of glycosidic bonds, GlycosylTransferases: GTnc integral component of membrane cell protein disulfide isomerase activity transmembrane transporter activity cell redox homeostasis | details |
| TreatCFM001317 | serine-type carboxypeptidase activity proteolysis | details |
| TreatCFM001318 | Transcriptional misregulation in cancers mitotic cell cycle checkpoint | details |
| TreatCFM001374 | serine family amino acid biosynthetic process formate catabolic process phosphoglycerate dehydrogenase activity formate dehydrogenase (NAD+) activity hydrogen peroxide catabolic process response to oxidative stress cellular oxidant detoxification oxidation-reduction process peroxidase activity heterocyclic compound binding organic cyclic compound binding NAD binding | details |
| TreatCFM001598 | details |
Expression profiles
 Show details about module gene expression profiling |