TreatCFM000369's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| mitotic spindle assembly checkpoint | 0.003069293 | GO:0007094 |
| Cell cycle | 0.015259711 | KEGG pathway |
| Transcription_related, Transcription factor: bZIP | 0.015259711 | TF family |
| carbohydrate binding | 0.032915094 | GO:0030246 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005266 | AT2G25310 (3.00E-46) | Protein of unknown function (DUF2012) |
| CRO_T006653 | - | - |
| CRO_T006685 | - | - |
| CRO_T008212 | - | - |
| CRO_T014019 | - | - |
| CRO_T014393 | - | - |
| CRO_T015379 | - | - |
| CRO_T018982 | - | - |
| CRO_T019287 | - | - |
| CRO_T026029 | - | - |
| CRO_T026761 | AT5G05510 (2.00E-16) | Mad3/BUB1 homology region 1 |
| CRO_T031679 | - | - |
| CRO_T031686 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000017 | Oxidative phosphorylation mitochondrion NADH dehydrogenase (ubiquinone) activity mitochondrial inner membrane heme transporter activity heme transport cytochrome-c oxidase activity respiratory chain cytochrome complex assembly hydrogen ion transmembrane transport ATP synthesis coupled electron transport heme binding aerobic respiration hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances aerobic electron transport chain electron transport chain generation of precursor metabolites and energy ATP synthesis coupled proton transport mitochondrial electron transport, NADH to ubiquinone hydrogen ion transmembrane transporter activity quinone binding photosynthetic electron transport in photosystem II succinate dehydrogenase activity electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity succinate dehydrogenase complex | details |
| TreatCFM000032 | details | |
| TreatCFM000033 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP | details |
| TreatCFM000054 | low-affinity nitrate transport low-affinity nitrate transmembrane transporter activity mitotic spindle assembly checkpoint Transcription_related, Transcription factor: bZIP oligopeptide transport Cell cycle Amino sugar and nucleotide sugar metabolism | details |
| TreatCFM000098 | Cytochrome_P450, Cytochrome P450: CYP78A Protein_kinases_phosphatases, PPC:4.5.1.1: Male grem cell-associated kinase (mak) | details |
| TreatCFM000130 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP | details |
| TreatCFM000135 | Photosynthesis plastid chloroplast photosystem II reaction center Mpp10 complex photosynthetic electron transport chain viral nucleocapsid photosystem I snoRNA binding rRNA binding chloroplast thylakoid membrane | details |
| TreatCFM000166 | D-aminoacyl-tRNA deacylase activity D-amino acid catabolic process | details |
| TreatCFM000178 | cell tip growth mitotic spindle assembly checkpoint | details |
| TreatCFM000195 | carbohydrate binding | details |
| TreatCFM000211 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP NADH dehydrogenase (ubiquinone) activity | details |
| TreatCFM000220 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP | details |
| TreatCFM000221 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP | details |
| TreatCFM000229 | mitotic spindle assembly checkpoint Protein_kinases_phosphatases, PPC:1.4.1: Crinkly 4 Like Kinase Transcription_related, Transcription factor: bZIP Cell cycle NF-kappa B signaling pathway | details |
| TreatCFM000342 | integral component of membrane chloroplast inner membrane ATP synthesis coupled electron transport photosynthesis, light reaction hydrogen ion transmembrane transporter activity quinone binding carbohydrate binding NADH dehydrogenase (ubiquinone) activity hydrogen ion transmembrane transport Photosynthesis | details |
| TreatCFM000357 | tRNA dihydrouridine synthesis mitotic spindle assembly checkpoint tRNA dihydrouridine synthase activity Cell cycle | details |
| TreatCFM000385 | xyloglucan biosynthetic process endomembrane system organization fucose biosynthetic process | details |
| TreatCFM000428 | PcG protein complex copper uptake transmembrane transporter activity regulation of gene expression by genetic imprinting cellular metal ion homeostasis negative regulation of molecular function, epigenetic Lysine degradation single-stranded RNA binding protein import into chloroplast stroma DNA mediated transformation histone methylation copper ion transmembrane transport chloroplast inner membrane leaf morphogenesis vegetative to reproductive phase transition of meristem | details |
| TreatCFM000437 | histone methyltransferase activity (H3-K27 specific) DNA mediated transformation histone H3-K27 methylation regulation of DNA replication mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP Transcription_related, Transcription regulator: SET pollen development | details |
| TreatCFM000502 | histone methyltransferase activity (H3-K27 specific) regulation of DNA replication mitotic spindle assembly checkpoint DNA mediated transformation histone H3-K27 methylation Cell cycle Transcription_related, Transcription factor: bZIP Transcription_related, Transcription regulator: SET pollen development | details |
| TreatCFM000636 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP | details |
| TreatCFM000642 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP | details |
| TreatCFM000644 | carbohydrate binding | details |
| TreatCFM000645 | carbohydrate binding | details |
| TreatCFM000701 | endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) small-subunit processome assembly endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Ubiquitin_Proteasome_system, DUB: OTU | details |
| TreatCFM000731 | PI3K-Akt signaling pathway Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| TreatCFM000769 | carbohydrate binding | details |
| TreatCFM000785 | mitotic spindle assembly checkpoint Oxidative phosphorylation | details |
| TreatCFM000862 | mitotic spindle assembly checkpoint Transcription_related, Transcription factor: bZIP Apelin signaling pathway Cell cycle | details |
| TreatCFM000872 | mitotic spindle assembly checkpoint Transcription_related, Transcription factor: bZIP Apelin signaling pathway Cell cycle | details |
| TreatCFM000961 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP Ubiquitin_Proteasome_system, DUB: USP | details |
| TreatCFM000971 | mitotic spindle assembly checkpoint Protein_kinases_phosphatases, PPC:1.4.1: Crinkly 4 Like Kinase Transcription_related, Transcription factor: bZIP Cell cycle NF-kappa B signaling pathway | details |
| TreatCFM000994 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP | details |
| TreatCFM001075 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP | details |
| TreatCFM001076 | mitotic spindle assembly checkpoint ATP synthesis coupled electron transport Transcription_related, Transcription factor: bZIP NADH dehydrogenase (ubiquinone) activity mitochondrion | details |
| TreatCFM001175 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP | details |
| TreatCFM001410 | polyamine transmembrane transport mitotic spindle assembly checkpoint Transcription_related, Transcription factor: bZIP cellular metabolic process amino acid transmembrane transport L-amino acid transmembrane transporter activity polyamine transmembrane transporter activity Cell cycle | details |
| TreatCFM001569 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP intracellular membrane-bounded organelle | details |
Expression profiles
 Show details about module gene expression profiling |