TreatCFM000520's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.000528847 | ubs family |
| carbohydrate transport | 0.005485094 | GO:0008643 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008558 | - | - |
| CRO_T011995 | AT1G21870 (4.00E-43) | GONST5|golgi nucleotide sugar transporter 5 |
| CRO_T020137 | AT1G27660 (2.00E-21) | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| CRO_T021570 | - | - |
| CRO_T026387 | - | - |
| CRO_T026825 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000026 | Ubiquitin_Proteasome_system, DUB: JAMM Proteasome carbohydrate transport proteasome-mediated ubiquitin-dependent protein catabolic process proteasome complex | details |
| TreatCFM000144 | carbohydrate transport | details |
| TreatCFM000233 | Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation COP9 signalosome carbohydrate transport | details |
| TreatCFM000349 | benzoyl-CoA biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: BES1 Transcription_related, Transcription regulator: LIM Ubiquitin_Proteasome_system, DUB: JAMM glycoprotein 2-beta-D-xylosyltransferase activity fatty acid β-oxidation II (peroxisome) transcription factor activity, sequence-specific DNA binding transcription regulatory region DNA binding benzoate biosynthesis I (CoA-dependent, β-oxidative) protein N-linked glycosylation formation of translation preinitiation complex regulation of transcription, DNA-templated carbohydrate transport regulation of translational initiation brassinosteroid mediated signaling pathway | details |
| TreatCFM000390 | Ubiquitin_Proteasome_system, DUB: JAMM L-phenylalanine biosynthesis II L-phenylalanine biosynthesis III (cytosolic, plants) prephenate dehydratase activity arogenate dehydratase activity L-phenylalanine biosynthetic process oxalate metabolic process oxalate decarboxylase activity nutrient reservoir activity manganese ion binding carbohydrate transport amino acid binding proteasome-mediated ubiquitin-dependent protein catabolic process Proteasome Biosynthesis of amino acids | details |
| TreatCFM000414 | carbohydrate transport | details |
| TreatCFM000722 | carbohydrate transport binding | details |
| TreatCFM000764 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K activation of MAPK activity defense response, incompatible interaction MAP kinase kinase activity | details |
| TreatCFM000777 | carbohydrate transport mitochondrion integral component of membrane | details |
| TreatCFM000803 | Ubiquitin_Proteasome_system, DUB: JAMM carbohydrate transport formation of translation preinitiation complex translation initiation factor activity eukaryotic 48S preinitiation complex eukaryotic translation initiation factor 3 complex eukaryotic 43S preinitiation complex RNA transport | details |
| TreatCFM000829 | Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation COP9 signalosome carbohydrate transport | details |
| TreatCFM001044 | Cytochrome_P450, Cytochrome P450: CYP87A Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TreatCFM001045 | Cytochrome_P450, Cytochrome P450: CYP87A Ubiquitin_Proteasome_system, E3 adaptor: DWD hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Pentose and glucuronate interconversions | details |
| TreatCFM001049 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K defense response, incompatible interaction activation of MAPK activity MAP kinase kinase activity MAP kinase activity MAPK cascade Homologous recombination MAPK signaling pathway - plant | details |
| TreatCFM001093 | transcription from RNA polymerase III promoter carbohydrate transport DNA-directed RNA polymerase III complex ribonucleoside binding RNA polymerase III activity RNA degradation Purine metabolism | details |
| TreatCFM001106 | nitrogen compound metabolic process organic substance metabolic process carbohydrate transport primary metabolic process cellular metabolic process binding | details |
| TreatCFM001114 | xyloglucan biosynthetic process endomembrane system organization fucose biosynthetic process integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth formation of glycosidic bonds, GlycosylTransferases: GTnc aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) glycolysis I (from glucose 6-phosphate) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII | details |
| TreatCFM001221 | Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation COP9 signalosome carbohydrate transport | details |
| TreatCFM001293 | Transcription_related, Transcription regulator: LIM Ubiquitin_Proteasome_system, E3 adaptor: Cullin cullin-RING ubiquitin ligase complex Sphingolipid metabolism carbohydrate transport protein ubiquitination involved in ubiquitin-dependent protein catabolic process ubiquitin protein ligase binding ubiquitin protein ligase activity | details |
| TreatCFM001298 | 3R-hydroxyacyl-CoA dehydratase activity fatty acid beta-oxidation, unsaturated, even number Transcription_related, Transcription regulator: LIM carbohydrate transport arachidonate biosynthesis IV (8-detaturase, lower eukaryotes) unsaturated, even numbered fatty acid β-oxidation very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II Peroxisome | details |
| TreatCFM001445 | carbohydrate transport | details |
| TreatCFM001471 | carbohydrate transport transporter activity | details |
| TreatCFM001550 | carbohydrate transport | details |
Expression profiles
 Show details about module gene expression profiling |