TreatCFM000349's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| benzoyl-CoA biosynthesis | 0.00536189 | plantCyc |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.00901742 | cazy family |
| Transcription_related, Transcription factor: BES1 | 0.00901742 | TF family |
| Transcription_related, Transcription regulator: LIM | 0.00901742 | TF family |
| Ubiquitin_Proteasome_system, DUB: JAMM | 0.009462698 | ubs family |
| glycoprotein 2-beta-D-xylosyltransferase activity | 0.011797902 | GO:0050513 |
| fatty acid β-oxidation II (peroxisome) | 0.024929926 | plantCyc |
| transcription factor activity, sequence-specific DNA binding | 0.028250697 | GO:0003700 |
| transcription regulatory region DNA binding | 0.033353395 | GO:0044212 |
| benzoate biosynthesis I (CoA-dependent, β-oxidative) | 0.037202235 | plantCyc |
| protein N-linked glycosylation | 0.048169614 | GO:0006487 |
| formation of translation preinitiation complex | 0.048169614 | GO:0001731 |
| regulation of transcription, DNA-templated | 0.048169614 | GO:0006355 |
| carbohydrate transport | 0.048169614 | GO:0008643 |
| regulation of translational initiation | 0.048169614 | GO:0006446 |
| brassinosteroid mediated signaling pathway | 0.048169614 | GO:0009742 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002100 | AT1G78700 (5.00E-89) | BEH4|BES1/BZR1 homolog 4 |
| CRO_T006703 | AT4G20980 (0) | Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) |
| CRO_T011991 | AT1G10200 (2.00E-54) | WLIM1|WLIM1 |
| CRO_T011995 | AT1G21870 (4.00E-43) | GONST5|golgi nucleotide sugar transporter 5 |
| CRO_T013493 | AT4G38090 (9.00E-47) | Ribosomal protein S5 domain 2-like superfamily protein |
| CRO_T015406 | AT1G04710 (0) | KAT1|3-KETO-ACYL-COA THIOLASE 1; PKT4|peroxisomal 3-ketoacyl-CoA thiolase 4 |
| CRO_T019201 | - | - |
| CRO_T021073 | AT5G55500 (0) | ATXYLT|BETA-1,2-XYLOSYLTRANSFERASE |
| CRO_T027408 | AT4G21150 (1.00E-174) | HAP6|HAPLESS 6; RPN2|RIBOPHORIN II |
| CRO_T027578 | AT1G74640 (2.00E-119) | alpha/beta-Hydrolases superfamily protein |
| CRO_T033225 | AT3G11270 (4.00E-157) | MEE34|maternal effect embryo arrest 34 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000026 | Ubiquitin_Proteasome_system, DUB: JAMM Proteasome carbohydrate transport proteasome-mediated ubiquitin-dependent protein catabolic process proteasome complex | details |
| TreatCFM000046 | details | |
| TreatCFM000078 | proteasome complex Transcription_related, Transcription factor: GeBP Ubiquitin_Proteasome_system, DUB: JAMM Proteasome Transcription_related, Transcription factor: Trihelix proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM000099 | Spliceosome sulfate activation for sulfonation sulfate reduction II (assimilatory) Transcription_related, Transcription factor: NAC Ubiquitin_Proteasome_system, DUB: JAMM HTLV-I infection L-valine degradation I | details |
| TreatCFM000118 | Ubiquitin_Proteasome_system, DUB: JAMM formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM000126 | Ubiquitin_Proteasome_system, DUB: JAMM proteasome complex Proteasome proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM000144 | carbohydrate transport | details |
| TreatCFM000183 | calcium ion transport Ubiquitin_Proteasome_system, DUB: JAMM Proteasome proteasome-mediated ubiquitin-dependent protein catabolic process proteasome complex | details |
| TreatCFM000207 | proteasome complex xylogalacturonan biosynthesis Ubiquitin_Proteasome_system, DUB: JAMM Proteasome formation of glycosidic bonds, GlycosylTransferases: GTnc proteasome-mediated ubiquitin-dependent protein catabolic process transferase activity | details |
| TreatCFM000233 | Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation COP9 signalosome carbohydrate transport | details |
| TreatCFM000272 | xyloglucan biosynthetic process endomembrane system organization cellular response to gravity fucose biosynthetic process | details |
| TreatCFM000279 | Ubiquitin_Proteasome_system, DUB: JAMM Golgi vesicle budding phospholipid translocation Proteasome phospholipid-translocating ATPase activity proteasome-mediated ubiquitin-dependent protein catabolic process proteasome complex | details |
| TreatCFM000284 | second spliceosomal transesterification activity generation of catalytic spliceosome for second transesterification step nuclear retention of unspliced pre-mRNA at the site of transcription Ubiquitin_Proteasome_system, DUB: JAMM U2-type post-spliceosomal complex U5 snRNP proteasome complex U4/U6 x U5 tri-snRNP complex proteasome-mediated ubiquitin-dependent protein catabolic process Proteasome Spliceosome | details |
| TreatCFM000285 | Ubiquitin_Proteasome_system, DUB: JAMM precatalytic spliceosome proteasome complex response to salt stress proteasome-mediated ubiquitin-dependent protein catabolic process Proteasome Spliceosome | details |
| TreatCFM000390 | Ubiquitin_Proteasome_system, DUB: JAMM L-phenylalanine biosynthesis II L-phenylalanine biosynthesis III (cytosolic, plants) prephenate dehydratase activity arogenate dehydratase activity L-phenylalanine biosynthetic process oxalate metabolic process oxalate decarboxylase activity nutrient reservoir activity manganese ion binding carbohydrate transport amino acid binding proteasome-mediated ubiquitin-dependent protein catabolic process Proteasome Biosynthesis of amino acids | details |
| TreatCFM000403 | Ubiquitin_Proteasome_system, DUB: JAMM proteasome complex Proteasome proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM000414 | carbohydrate transport | details |
| TreatCFM000416 | Ubiquitin_Proteasome_system, DUB: JAMM proteasome complex Proteasome proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM000423 | Ubiquitin_Proteasome_system, DUB: JAMM proteasome complex Proteasome nucleic acid metabolic process cellular macromolecule metabolic process proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM000430 | Ubiquitin_Proteasome_system, DUB: JAMM Proteasome chloroplast accumulation movement proteasome complex microtubule proteasome-mediated ubiquitin-dependent protein catabolic process microtubule-based movement | details |
| TreatCFM000453 | Ubiquitin_Proteasome_system, DUB: JAMM proteasome complex proteasome-mediated ubiquitin-dependent protein catabolic process Proteasome Sesquiterpenoid and triterpenoid biosynthesis | details |
| TreatCFM000484 | details | |
| TreatCFM000520 | Ubiquitin_Proteasome_system, E3 adaptor: DWD carbohydrate transport | details |
| TreatCFM000612 | Ubiquitin_Proteasome_system, DUB: JAMM Proteasome proteasome complex proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM000613 | Ubiquitin_Proteasome_system, DUB: JAMM proteasome complex precatalytic spliceosome COP9 signalosome cullin deneddylation proteasome-mediated ubiquitin-dependent protein catabolic process response to salt stress Proteasome | details |
| TreatCFM000686 | integral component of plasma membrane Smc5-Smc6 complex Ubiquitin_Proteasome_system, DUB: JAMM Proteasome proteasome complex cellular water homeostasis calcium ion transmembrane transport single-organism transport resolution of recombination intermediates double-strand break repair via homologous recombination ion transmembrane transport water channel activity calcium-transporting ATPase activity glycerol channel activity Transcription_related, Transcription factor: bHLH proteasome-mediated ubiquitin-dependent protein catabolic process calmodulin binding | details |
| TreatCFM000715 | Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation COP9 signalosome proteasome complex Proteasome proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM000722 | carbohydrate transport binding | details |
| TreatCFM000741 | proteasome complex Ubiquitin_Proteasome_system, DUB: JAMM Proteasome proteasome-mediated ubiquitin-dependent protein catabolic process Transcription_related, Transcription factor: ERF | details |
| TreatCFM000764 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K activation of MAPK activity defense response, incompatible interaction MAP kinase kinase activity | details |
| TreatCFM000777 | carbohydrate transport mitochondrion integral component of membrane | details |
| TreatCFM000799 | Ubiquitin_Proteasome_system, DUB: JAMM Proteasome proteasome complex proteasome-mediated ubiquitin-dependent protein catabolic process intracellular part | details |
| TreatCFM000803 | Ubiquitin_Proteasome_system, DUB: JAMM carbohydrate transport formation of translation preinitiation complex translation initiation factor activity eukaryotic 48S preinitiation complex eukaryotic translation initiation factor 3 complex eukaryotic 43S preinitiation complex RNA transport | details |
| TreatCFM000829 | Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation COP9 signalosome carbohydrate transport | details |
| TreatCFM000843 | Ubiquitin_Proteasome_system, DUB: JAMM negative regulation of innate immune response petal formation negative regulation of cell proliferation mRNA polyadenylation leaf development proteasome complex mRNA surveillance pathway Proteasome polynucleotide adenylyltransferase activity proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM000955 | inosine-5'-phosphate biosynthesis II spermidine biosynthesis I spermine biosynthesis chloroplast mRNA processing S-adenosylmethioninamine biosynthetic process peptidyl-proline hydroxylation adenine biosynthetic process polycistronic mRNA processing spermine biosynthetic process spermidine biosynthetic process 'de novo' IMP biosynthetic process phosphoribosylaminoimidazolesuccinocarboxamide synthase activity phosphoribosylaminoimidazole carboxylase activity adenosylmethionine decarboxylase activity procollagen-proline 4-dioxygenase activity transcription regulatory region DNA binding L-ascorbic acid binding Arginine and proline metabolism Cysteine and methionine metabolism chloroplast nucleoid response to auxin Purine metabolism | details |
| TreatCFM000978 | proteasome complex Ubiquitin_Proteasome_system, DUB: JAMM Proteasome Transcription_related, Transcription regulator: PHD proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM000980 | proteasome complex RNA-dependent DNA biosynthetic process RNA-directed DNA polymerase activity Ubiquitin_Proteasome_system, DUB: JAMM Proteasome DNA integration DNA recombination Transcription_related, Transcription factor: bHLH proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM000981 | Ubiquitin_Proteasome_system, DUB: JAMM Proteasome proteasome complex intracellular part response to stimulus regulation of catalytic activity regulation of cellular process proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM001093 | transcription from RNA polymerase III promoter carbohydrate transport DNA-directed RNA polymerase III complex ribonucleoside binding RNA polymerase III activity RNA degradation Purine metabolism | details |
| TreatCFM001106 | nitrogen compound metabolic process organic substance metabolic process carbohydrate transport primary metabolic process cellular metabolic process binding | details |
| TreatCFM001161 | Transcription_related, Transcription regulator: LIM glycolysis I (from glucose 6-phosphate) Transcription_related, Transcription factor: C2H2 | details |
| TreatCFM001221 | Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation COP9 signalosome carbohydrate transport | details |
| TreatCFM001293 | Transcription_related, Transcription regulator: LIM Ubiquitin_Proteasome_system, E3 adaptor: Cullin cullin-RING ubiquitin ligase complex Sphingolipid metabolism carbohydrate transport protein ubiquitination involved in ubiquitin-dependent protein catabolic process ubiquitin protein ligase binding ubiquitin protein ligase activity | details |
| TreatCFM001298 | 3R-hydroxyacyl-CoA dehydratase activity fatty acid beta-oxidation, unsaturated, even number Transcription_related, Transcription regulator: LIM carbohydrate transport arachidonate biosynthesis IV (8-detaturase, lower eukaryotes) unsaturated, even numbered fatty acid β-oxidation very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II Peroxisome | details |
| TreatCFM001390 | riboflavin synthase activity Ubiquitin_Proteasome_system, DUB: JAMM proteasome complex Riboflavin metabolism Transcription_related, Transcription factor: bZIP Proteasome riboflavin biosynthetic process proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM001445 | carbohydrate transport | details |
| TreatCFM001471 | carbohydrate transport transporter activity | details |
| TreatCFM001550 | carbohydrate transport | details |
| TreatCFM001637 | Ubiquitin_Proteasome_system, DUB: JAMM rosmarinic acid biosynthesis I rosmarinic acid biosynthesis II 4-hydroxybenzoate biosynthesis I (eukaryotes) rRNA primary transcript binding oligosaccharyltransferase complex COP9 signalosome maturation of LSU-rRNA maturation of 5.8S rRNA protein N-linked glycosylation cullin deneddylation oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor ribosomal large subunit assembly NAD binding preribosome, large subunit precursor N-Glycan biosynthesis embryo development ending in seed dormancy | details |
| TreatCFM001663 | Transcription_related, Transcription regulator: LIM FAD binding plastoglobule oxidation-reduction process secondary metabolite biosynthetic process | details |
| TreatCFM001804 | Ubiquitin_Proteasome_system, DUB: JAMM Transcription_related, Transcription regulator: LIM formation of translation preinitiation complex regulation of translational initiation eukaryotic 48S preinitiation complex eukaryotic translation initiation factor 3 complex proteasome complex eukaryotic 43S preinitiation complex proteasome-mediated ubiquitin-dependent protein catabolic process Homologous recombination Proteasome RNA transport | details |
| TreatCFM001815 | malate transport formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: DBP benzoyl-CoA biosynthesis glycoprotein 2-beta-D-xylosyltransferase activity Fatty acid metabolism fatty acid β-oxidation II (peroxisome) benzoate biosynthesis I (CoA-dependent, β-oxidative) malate transmembrane transporter activity O-acetyltransferase activity transferase activity, transferring acyl groups other than amino-acyl groups protein serine/threonine phosphatase activity cell wall organization or biogenesis protein dephosphorylation | details |
| TreatCFM001841 | Transcription_related, Transcription regulator: LIM imidazoleglycerol-phosphate dehydratase activity L-histidine biosynthesis plant sterol biosynthesis histidine biosynthetic process anion transport FAD binding Steroid biosynthesis plastoglobule Biosynthesis of amino acids transmembrane transporter activity | details |
| TreatCFM002059 | red chlorophyll catabolite reductase activity phosphomannomutase activity carbohydrate phosphatase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Transcription_related, Transcription regulator: LIM regulation of plant-type hypersensitive response defense response, incompatible interaction starch metabolic process protein tyrosine/serine/threonine phosphatase activity phosphate ion transport Circadian rhythm chlorophyll catabolic process chlorophyll a degradation II GDP-glucose biosynthesis GDP-mannose biosynthesis glucose and glucose-1-phosphate degradation starch degradation II UDP-glucose biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) starch biosynthesis sucrose biosynthesis II Porphyrin and chlorophyll metabolism ER to Golgi vesicle-mediated transport | details |
Expression profiles
 Show details about module gene expression profiling |