TreatCFM001093's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| transcription from RNA polymerase III promoter | 0.008772705 | GO:0006383 |
| carbohydrate transport | 0.015084009 | GO:0008643 |
| DNA-directed RNA polymerase III complex | 0.017533747 | GO:0005666 |
| ribonucleoside binding | 0.018197904 | GO:0032549 |
| RNA polymerase III activity | 0.018197904 | GO:0001056 |
| RNA degradation | 0.039155773 | KEGG pathway |
| Purine metabolism | 0.039983053 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005810 | AT5G45140 (0) | NRPC2|nuclear RNA polymerase C2 |
| CRO_T005989 | AT5G48340 (1.00E-18) | unknown protein |
| CRO_T011995 | AT1G21870 (4.00E-43) | GONST5|golgi nucleotide sugar transporter 5 |
| CRO_T016887 | - | - |
| CRO_T026920 | AT2G05760 (0) | Xanthine/uracil permease family protein |
| CRO_T028779 | AT3G25440 (3.00E-94) | RNA-binding CRS1 / YhbY (CRM) domain protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000026 | Ubiquitin_Proteasome_system, DUB: JAMM Proteasome carbohydrate transport proteasome-mediated ubiquitin-dependent protein catabolic process proteasome complex | details |
| TreatCFM000144 | carbohydrate transport | details |
| TreatCFM000154 | Transcription_related, Transcription factor: AP2 adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc phosphoprotein phosphatase activity transporter activity Protein processing in endoplasmic reticulum | details |
| TreatCFM000233 | Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation COP9 signalosome carbohydrate transport | details |
| TreatCFM000349 | benzoyl-CoA biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: BES1 Transcription_related, Transcription regulator: LIM Ubiquitin_Proteasome_system, DUB: JAMM glycoprotein 2-beta-D-xylosyltransferase activity fatty acid β-oxidation II (peroxisome) transcription factor activity, sequence-specific DNA binding transcription regulatory region DNA binding benzoate biosynthesis I (CoA-dependent, β-oxidative) protein N-linked glycosylation formation of translation preinitiation complex regulation of transcription, DNA-templated carbohydrate transport regulation of translational initiation brassinosteroid mediated signaling pathway | details |
| TreatCFM000390 | Ubiquitin_Proteasome_system, DUB: JAMM L-phenylalanine biosynthesis II L-phenylalanine biosynthesis III (cytosolic, plants) prephenate dehydratase activity arogenate dehydratase activity L-phenylalanine biosynthetic process oxalate metabolic process oxalate decarboxylase activity nutrient reservoir activity manganese ion binding carbohydrate transport amino acid binding proteasome-mediated ubiquitin-dependent protein catabolic process Proteasome Biosynthesis of amino acids | details |
| TreatCFM000414 | carbohydrate transport | details |
| TreatCFM000520 | Ubiquitin_Proteasome_system, E3 adaptor: DWD carbohydrate transport | details |
| TreatCFM000722 | carbohydrate transport binding | details |
| TreatCFM000723 | UFM1 hydrolase activity Protein_kinases_phosphatases, PPC:1.6.3: Receptor Like Cytoplasmic Kinase V Pentose and glucuronate interconversions non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 pectate lyase activity MAP kinase kinase kinase activity aminopeptidase activity manganese ion binding adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc activation of MAPKK activity pectin catabolic process MAPK cascade | details |
| TreatCFM000764 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K activation of MAPK activity defense response, incompatible interaction MAP kinase kinase activity | details |
| TreatCFM000777 | carbohydrate transport mitochondrion integral component of membrane | details |
| TreatCFM000803 | Ubiquitin_Proteasome_system, DUB: JAMM carbohydrate transport formation of translation preinitiation complex translation initiation factor activity eukaryotic 48S preinitiation complex eukaryotic translation initiation factor 3 complex eukaryotic 43S preinitiation complex RNA transport | details |
| TreatCFM000829 | Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation COP9 signalosome carbohydrate transport | details |
| TreatCFM001106 | nitrogen compound metabolic process organic substance metabolic process carbohydrate transport primary metabolic process cellular metabolic process binding | details |
| TreatCFM001221 | Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation COP9 signalosome carbohydrate transport | details |
| TreatCFM001292 | Transcription_related, Transcription regulator: SWI/SNF-SWI3 spermine and spermidine degradation III starch biosynthesis regulation of SNARE complex assembly lysosome organization histone H3-K4 methylation endosome organization glycogen biosynthetic process transcription from RNA polymerase III promoter vesicle docking involved in exocytosis clathrin vesicle coat HOPS complex protein binding, bridging glucose-1-phosphate adenylyltransferase activity starch biosynthetic process DNA-directed RNA polymerase III complex RNA polymerase III activity ribonucleoside binding ATP-dependent peptidase activity DNA binding Autophagy - yeast | details |
| TreatCFM001293 | Transcription_related, Transcription regulator: LIM Ubiquitin_Proteasome_system, E3 adaptor: Cullin cullin-RING ubiquitin ligase complex Sphingolipid metabolism carbohydrate transport protein ubiquitination involved in ubiquitin-dependent protein catabolic process ubiquitin protein ligase binding ubiquitin protein ligase activity | details |
| TreatCFM001298 | 3R-hydroxyacyl-CoA dehydratase activity fatty acid beta-oxidation, unsaturated, even number Transcription_related, Transcription regulator: LIM carbohydrate transport arachidonate biosynthesis IV (8-detaturase, lower eukaryotes) unsaturated, even numbered fatty acid β-oxidation very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II Peroxisome | details |
| TreatCFM001346 | Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 rRNA (uridine-N3-)-methyltransferase activity rRNA base methylation lignin catabolic process lignin biosynthetic process peptidyl-serine phosphorylation | details |
| TreatCFM001445 | carbohydrate transport | details |
| TreatCFM001471 | carbohydrate transport transporter activity | details |
| TreatCFM001491 | lipid transporter activity plasmodesma Hedgehog signaling pathway lipid transport Lysosome adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII Ubiquitin_Proteasome_system, E3 adaptor: BTB transporter activity | details |
| TreatCFM001550 | carbohydrate transport | details |
| TreatCFM001632 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc aminopeptidase activity manganese ion binding Protein processing in endoplasmic reticulum | details |
Expression profiles
 Show details about module gene expression profiling |