TreatCFM000706's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| vacuolar transport | 0.002833905 | GO:0007034 |
| Endocytosis | 0.02340204 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008184 | - | - |
| CRO_T010000 | - | - |
| CRO_T011927 | - | - |
| CRO_T016324 | - | - |
| CRO_T020572 | AT1G03950 (5.00E-76) | VPS2.3|vacuolar protein sorting-associated protein 2.3 |
| CRO_T023898 | AT1G17130 (2.00E-82) | Family of unknown function (DUF572) |
| CRO_T025821 | - | - |
| CRO_T031162 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000017 | Oxidative phosphorylation mitochondrion NADH dehydrogenase (ubiquinone) activity mitochondrial inner membrane heme transporter activity heme transport cytochrome-c oxidase activity respiratory chain cytochrome complex assembly hydrogen ion transmembrane transport ATP synthesis coupled electron transport heme binding aerobic respiration hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances aerobic electron transport chain electron transport chain generation of precursor metabolites and energy ATP synthesis coupled proton transport mitochondrial electron transport, NADH to ubiquinone hydrogen ion transmembrane transporter activity quinone binding photosynthetic electron transport in photosystem II succinate dehydrogenase activity electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity succinate dehydrogenase complex | details |
| TreatCFM000050 | details | |
| TreatCFM000090 | endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) small-subunit processome assembly endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Stilbenoid, diarylheptanoid and gingerol biosynthesis | details |
| TreatCFM000182 | trans-zeatin biosynthesis | details |
| TreatCFM000229 | mitotic spindle assembly checkpoint Protein_kinases_phosphatases, PPC:1.4.1: Crinkly 4 Like Kinase Transcription_related, Transcription factor: bZIP Cell cycle NF-kappa B signaling pathway | details |
| TreatCFM000310 | Cyanoamino acid metabolism cyanide biosynthetic process protein methylation | details |
| TreatCFM000340 | details | |
| TreatCFM000467 | vacuolar transport Endocytosis intracellular | details |
| TreatCFM000516 | intracellular fucose biosynthetic process xyloglucan biosynthetic process endomembrane system organization formation of glycosidic bonds, GlycosylTransferases: GTnc integral component of Golgi membrane | details |
| TreatCFM000538 | vacuolar transport Transcription_related, Transcription factor: NF-YC protein heterodimerization activity Antigen processing and presentation Endocytosis | details |
| TreatCFM000618 | dUDP biosynthetic process dTDP biosynthetic process dTTP biosynthetic process thymidylate kinase activity ethanolamine-phosphate cytidylyltransferase activity | details |
| TreatCFM000637 | Amyotrophic lateral sclerosis (ALS) mitochondrial outer membrane translocase complex protein import into mitochondrial matrix vacuolar transport NLS-bearing protein import into nucleus base-excision repair DNA N-glycosylase activity nucleoplasm nuclear pore Base excision repair Lysosome regulation of catalytic activity nuclear localization sequence binding protein channel activity cysteine-type endopeptidase activity protein transporter activity Endocytosis | details |
| TreatCFM000705 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc lysozyme activity chitinase activity chitin binding chitin catabolic process Amino sugar and nucleotide sugar metabolism extracellular region | details |
| TreatCFM000788 | vacuolar transport Endocytosis intracellular | details |
| TreatCFM000834 | small GTPase mediated signal transduction GTP binding | details |
| TreatCFM000974 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K defense response, incompatible interaction activation of MAPK activity indole-3-acetyl-amide conjugate biosynthesis vacuolar transport MAP kinase kinase activity | details |
| TreatCFM001029 | vacuolar transport Endocytosis intracellular | details |
| TreatCFM001123 | vacuolar transport Endocytosis intracellular | details |
| TreatCFM001208 | vacuolar transport Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase Endocytosis intracellular | details |
| TreatCFM001381 | vacuolar transport Arachidonic acid metabolism Fanconi anemia pathway Endocytosis | details |
| TreatCFM001484 | fucose biosynthetic process endomembrane system organization xyloglucan biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc polyamine transmembrane transporter activity L-amino acid transmembrane transporter activity polyamine transmembrane transport aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis salicylic acid mediated signaling pathway integral component of Golgi membrane unidimensional cell growth amino acid transmembrane transport Purine metabolism antiporter activity transferase activity, transferring glycosyl groups | details |
| TreatCFM001555 | vacuolar transport Transcription_related, Transcription factor: HB intracellular | details |
| TreatCFM001557 | kinase activity | details |
Expression profiles
 Show details about module gene expression profiling |