TreatCFM000310's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Cyanoamino acid metabolism | 0.020385367 | KEGG pathway |
| cyanide biosynthetic process | 0.048198944 | GO:0046202 |
| protein methylation | 0.048198944 | GO:0006479 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000818 | - | - |
| CRO_T002565 | - | - |
| CRO_T004146 | - | - |
| CRO_T004623 | - | - |
| CRO_T005095 | - | - |
| CRO_T006418 | - | - |
| CRO_T007383 | - | - |
| CRO_T010496 | - | - |
| CRO_T011645 | - | - |
| CRO_T012583 | AT1G72970 (8.00E-14) | EDA17|embryo sac development arrest 17; HTH|HOTHEAD |
| CRO_T012991 | - | - |
| CRO_T013711 | - | - |
| CRO_T014689 | - | - |
| CRO_T015999 | - | - |
| CRO_T016229 | - | - |
| CRO_T016531 | AT2G32670 (5.00E-87) | ATVAMP725|vesicle-associated membrane protein 725 |
| CRO_T018244 | - | - |
| CRO_T018973 | - | - |
| CRO_T020990 | - | - |
| CRO_T021272 | - | - |
| CRO_T021486 | AT5G64150 (3.00E-58) | RNA methyltransferase family protein |
| CRO_T022675 | - | - |
| CRO_T022725 | - | - |
| CRO_T023434 | - | - |
| CRO_T023657 | - | - |
| CRO_T023797 | - | - |
| CRO_T023814 | - | - |
| CRO_T023898 | AT1G17130 (2.00E-82) | Family of unknown function (DUF572) |
| CRO_T023980 | - | - |
| CRO_T024129 | - | - |
| CRO_T024132 | - | - |
| CRO_T024602 | - | - |
| CRO_T026393 | - | - |
| CRO_T027621 | - | - |
| CRO_T028036 | - | - |
| CRO_T029117 | - | - |
| CRO_T029705 | - | - |
| CRO_T029708 | - | - |
| CRO_T031172 | - | - |
| CRO_T032562 | - | - |
| CRO_T033235 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000004 | Transcription_related, Transcription factor: MYB | details |
| TreatCFM000008 | Ubiquitin_Proteasome_system, E3 adaptor: SKP1 | details |
| TreatCFM000017 | Oxidative phosphorylation mitochondrion NADH dehydrogenase (ubiquinone) activity mitochondrial inner membrane heme transporter activity heme transport cytochrome-c oxidase activity respiratory chain cytochrome complex assembly hydrogen ion transmembrane transport ATP synthesis coupled electron transport heme binding aerobic respiration hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances aerobic electron transport chain electron transport chain generation of precursor metabolites and energy ATP synthesis coupled proton transport mitochondrial electron transport, NADH to ubiquinone hydrogen ion transmembrane transporter activity quinone binding photosynthetic electron transport in photosystem II succinate dehydrogenase activity electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity succinate dehydrogenase complex | details |
| TreatCFM000024 | Arp2/3 protein complex Arp2/3 complex-mediated actin nucleation mitochondrial small ribosomal subunit protein methylation protein methyltransferase activity apigenin glycosides biosynthesis genistin gentiobioside biosynthesis kaempferol gentiobioside biosynthesis luteolin glycosides biosynthesis myricetin gentiobioside biosynthesis | details |
| TreatCFM000050 | details | |
| TreatCFM000059 | Amino sugar and nucleotide sugar metabolism cell wall macromolecule catabolic process chitinase activity chitin binding chitin catabolic process homogalacturonan biosynthesis | details |
| TreatCFM000090 | endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) small-subunit processome assembly endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Stilbenoid, diarylheptanoid and gingerol biosynthesis | details |
| TreatCFM000117 | details | |
| TreatCFM000137 | membrane coat | details |
| TreatCFM000229 | mitotic spindle assembly checkpoint Protein_kinases_phosphatases, PPC:1.4.1: Crinkly 4 Like Kinase Transcription_related, Transcription factor: bZIP Cell cycle NF-kappa B signaling pathway | details |
| TreatCFM000242 | protein methylation mitochondrial small ribosomal subunit protein methyltransferase activity | details |
| TreatCFM000277 | protein methylation protein methyltransferase activity apigenin glycosides biosynthesis genistin gentiobioside biosynthesis kaempferol gentiobioside biosynthesis luteolin glycosides biosynthesis myricetin gentiobioside biosynthesis curcumin glucoside biosynthesis sesaminol glucoside biosynthesis quercetin gentiotetraside biosynthesis transferase activity, transferring glycosyl groups formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM000299 | L-tyrosine biosynthesis II Mannose type O-glycan biosyntheis Other types of O-glycan biosynthesis tyrosine biosynthetic process histone exchange regulation of nitric-oxide synthase activity | details |
| TreatCFM000340 | details | |
| TreatCFM000345 | DNA-directed RNA polymerase activity Purine metabolism protein methyltransferase activity protein methylation Transcription_related, Transcription factor: HB | details |
| TreatCFM000376 | negative regulation of protein kinase activity cyanide biosynthetic process protein kinase inhibitor activity double-stranded RNA binding Cyanoamino acid metabolism Galactose metabolism protein kinase binding Transcription_related, Transcription factor: M-type | details |
| TreatCFM000554 | protein methylation protein methyltransferase activity | details |
| TreatCFM000618 | dUDP biosynthetic process dTDP biosynthetic process dTTP biosynthetic process thymidylate kinase activity ethanolamine-phosphate cytidylyltransferase activity | details |
| TreatCFM000706 | vacuolar transport Endocytosis | details |
| TreatCFM000789 | Taurine and hypotaurine metabolism Golgi stack anaerobic respiration Golgi to plasma membrane protein transport Golgi vesicle docking detection of hypoxia peptidyl-cysteine oxidation Autophagy - yeast intra-Golgi vesicle-mediated transport SNARE complex vesicle fusion exocytosis nucleic acid phosphodiester bond hydrolysis oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen SNAP receptor activity SNARE binding endonuclease activity ATPase activity | details |
| TreatCFM000834 | small GTPase mediated signal transduction GTP binding | details |
| TreatCFM000880 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity phytol kinase activity phytol salvage pathway protein methyltransferase activity vitamin E biosynthetic process protein methylation regulation of signal transduction gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt | details |
| TreatCFM000926 | Cyanoamino acid metabolism cyanide biosynthetic process small GTPase mediated signal transduction defense response | details |
| TreatCFM000963 | intracellular protein transport phosphatidylethanolamine biosynthesis I 1-phosphatidylinositol 4-kinase activity protein methyltransferase activity voltage-gated chloride channel activity protein methylation chloride transport phosphatidylinositol-mediated signaling 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis Ran GTPase binding regulation of anion transmembrane transport phosphatidylinositol phosphorylation unidimensional cell growth ion transmembrane transport Inositol phosphate metabolism Lysosome clathrin adaptor complex protein transporter activity vesicle-mediated transport RNA transport integral component of membrane | details |
| TreatCFM001484 | fucose biosynthetic process endomembrane system organization xyloglucan biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc polyamine transmembrane transporter activity L-amino acid transmembrane transporter activity polyamine transmembrane transport aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis salicylic acid mediated signaling pathway integral component of Golgi membrane unidimensional cell growth amino acid transmembrane transport Purine metabolism antiporter activity transferase activity, transferring glycosyl groups | details |
| TreatCFM001557 | kinase activity | details |
| TreatCFM001668 | helicase activity nucleic acid binding exocytosis vesicle fusion nucleic acid phosphodiester bond hydrolysis endonuclease activity SNARE binding SNAP receptor activity SNARE complex Spliceosome | details |
Expression profiles
 Show details about module gene expression profiling |