TreatCFM000301's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| vindoline and vinblastine biosynthesis | 0.020084229 | plantCyc |
| mRNA surveillance pathway | 0.034200072 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002027 | - | - |
| CRO_T008773 | AT2G36690 (1.00E-45) | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| CRO_T011089 | AT3G54850 (3.00E-25) | PUB14|plant U-box 14 |
| CRO_T012363 | - | - |
| CRO_T012553 | AT1G07630 (5.00E-22) | PLL5|pol-like 5 |
| CRO_T019601 | AT1G09530 (0.000000004) | PAP3|PHYTOCHROME-ASSOCIATED PROTEIN 3; PIF3|phytochrome interacting factor 3; POC1|PHOTOCURRENT 1 |
| CRO_T022670 | AT1G30130 (3.00E-109) | unknown protein |
| CRO_T029190 | AT3G61770 (2.00E-83) | Acid phosphatase/vanadium-dependent haloperoxidase-related protein |
| CRO_T029506 | - | - |
| CRO_T030318 | AT5G40490 (9.00E-33) | RNA-binding (RRM/RBD/RNP motifs) family protein |
| CRO_T030590 | AT5G65170 (1.00E-13) | VQ motif-containing protein |
| CRO_T030595 | - | - |
| CRO_T031464 | - | - |
| CRO_T032003 | AT5G03730 (2.00E-53) | CTR1|CONSTITUTIVE TRIPLE RESPONSE 1; SIS1|SUGAR-INSENSITIVE 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000002 | phosphogluconate dehydrogenase (decarboxylating) activity NAD binding | details |
| TreatCFM000036 | adenosylmethionine decarboxylase activity spermidine biosynthetic process spermine biosynthetic process spermidine biosynthesis I spermine biosynthesis Cysteine and methionine metabolism Transcription_related, Transcription factor: NAC | details |
| TreatCFM000083 | vomilenine glucosyltransferase activity strictosidine beta-glucosidase activity raucaffricine beta-glucosidase activity alkaloid biosynthetic process Transcription_related, Transcription factor: NAC Starch and sucrose metabolism | details |
| TreatCFM000092 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.7.2: Domain of Unknown Function 26 (DUF26) Kinase Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) anthocyanin-containing compound metabolic process defense response signaling pathway, resistance gene-independent plant-type hypersensitive response | details |
| TreatCFM000099 | Spliceosome sulfate activation for sulfonation sulfate reduction II (assimilatory) Transcription_related, Transcription factor: NAC Ubiquitin_Proteasome_system, DUB: JAMM HTLV-I infection L-valine degradation I | details |
| TreatCFM000101 | ajmaline and sarpagine biosynthesis RNA-dependent DNA biosynthetic process RNA-directed DNA polymerase activity Transcription_related, Transcription factor: C2H2 DNA integration DNA recombination | details |
| TreatCFM000187 | intracellular part response to biotic stimulus defense response Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TreatCFM000188 | Basal transcription factors Ubiquitin_Proteasome_system, E3 adaptor: DWD catalytic activity | details |
| TreatCFM000190 | allantoin degradation to glyoxylate II allantoin degradation to ureidoglycolate II (ammonia producing) copper uptake transmembrane transporter activity ureidoglycine aminohydrolase activity purine nucleobase catabolic process protein import into chloroplast stroma allantoin catabolic process cellular metal ion homeostasis ureide catabolic process copper ion transmembrane transport chloroplast inner membrane protein homodimerization activity Purine metabolism | details |
| TreatCFM000197 | Transcription_related, Transcription factor: WRKY MAPK signaling pathway - plant | details |
| TreatCFM000219 | Glycolysis / Gluconeogenesis acetaldehyde biosynthesis I pyruvate fermentation to ethanol II UDP-α-D-glucuronate biosynthesis (from UDP-glucose) UDP-D-xylose biosynthesis UDP-sugars interconversion Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 alcohol dehydrogenase (NAD) activity S-(hydroxymethyl)glutathione dehydrogenase activity UDP-glucose 6-dehydrogenase activity receptor activity protein phosphatase inhibitor activity abscisic acid binding | details |
| TreatCFM000246 | Legionellosis rRNA (adenine-N6,N6-)-dimethyltransferase activity Transcription_related, Transcription factor: SBP Transcription_related, Transcription factor: MYB-related rRNA methylation cell fate specification substrate-specific transmembrane transporter activity carbohydrate transport ER to Golgi vesicle-mediated transport cell division small GTPase mediated signal transduction | details |
| TreatCFM000258 | Amino sugar and nucleotide sugar metabolism Protein_kinases_phosphatases, PPC:1.1.1: Leucine-rich transmembrane protein kinase/Strubbelig Receptor Family 1 lysozyme activity chitinase activity chitin binding chitin catabolic process | details |
| TreatCFM000318 | details | |
| TreatCFM000346 | DNA integration plastid | details |
| TreatCFM000417 | secondary active sulfate transmembrane transporter activity sulfate transmembrane transport integral component of plasma membrane kinase activity | details |
| TreatCFM000441 | alliin lyase activity Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III Wnt signaling pathway | details |
| TreatCFM000470 | Protein_kinases_phosphatases, PPC:1.1.1: Leucine-rich transmembrane protein kinase/Strubbelig Receptor Family 1 lysozyme activity Amino sugar and nucleotide sugar metabolism | details |
| TreatCFM000477 | details | |
| TreatCFM000478 | Ubiquitin_Proteasome_system, E2: UBC | details |
| TreatCFM000507 | ureidoglycine aminohydrolase activity purine nucleobase catabolic process ureide catabolic process allantoin catabolic process allantoin degradation to glyoxylate II allantoin degradation to ureidoglycolate II (ammonia producing) Transcription_related, Transcription factor: FAR1 Purine metabolism | details |
| TreatCFM000509 | Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase guiding stereospecific synthesis activity regulation of catalytic activity phenylpropanoid biosynthetic process | details |
| TreatCFM000598 | histidine phosphotransfer kinase activity carbon-sulfur lyase activity protein histidine kinase binding cytokinin-activated signaling pathway phosphorelay signal transduction system | details |
| TreatCFM000635 | DNA mediated transformation Viral carcinogenesis | details |
| TreatCFM000742 | U6 snRNA 3'-end processing mRNA processing RNA splicing RNA phosphodiester bond hydrolysis, exonucleolytic 3'-5'-exoribonuclease activity peptidyl-serine phosphorylation | details |
| TreatCFM000760 | details | |
| TreatCFM000763 | details | |
| TreatCFM000767 | Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase Protein_kinases_phosphatases, PPC:2.1.3: CTR1/EDR1 Kinase protein serine/threonine/tyrosine kinase activity protein kinase activity magnesium ion transport magnesium ion transmembrane transport ATP binding magnesium ion transmembrane transporter activity protein phosphorylation | details |
| TreatCFM000867 | benzoate biosynthesis I (CoA-dependent, β-oxidative) Oxidative phosphorylation | details |
| TreatCFM000927 | details | |
| TreatCFM000990 | response to sucrose negative regulation of cell aging regulation of nucleic acid-templated transcription Noc complex vesicle negative regulation of flower development nuclear lumen protein targeting to vacuole vegetative to reproductive phase transition of meristem transcription cofactor activity preribosome, large subunit precursor dioxygenase activity | details |
| TreatCFM001059 | quercetin 7-O-glucosyltransferase activity quercetin 3-O-glucosyltransferase activity flavonoid biosynthetic process flavonoid glucuronidation | details |
| TreatCFM001172 | redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 vindoline and vinblastine biosynthesis oxidation-reduction process protein dephosphorylation protein serine/threonine phosphatase activity metal ion binding oxidoreductase activity, acting on CH-OH group of donors flavin adenine dinucleotide binding dioxygenase activity | details |
| TreatCFM001183 | details | |
| TreatCFM001277 | oxidoreductase activity, acting on NAD(P)H 3'-5' exonuclease activity DNA-directed DNA polymerase activity DNA biosynthetic process nucleic acid phosphodiester bond hydrolysis DNA replication Oxidative phosphorylation | details |
Expression profiles
 Show details about module gene expression profiling |