TreatCFM000242's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| protein methylation | 0.005363972 | GO:0006479 |
| mitochondrial small ribosomal subunit | 0.022963015 | GO:0005763 |
| protein methyltransferase activity | 0.031951985 | GO:0008276 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000673 | - | - |
| CRO_T000719 | - | - |
| CRO_T002846 | - | - |
| CRO_T003828 | - | - |
| CRO_T007628 | - | - |
| CRO_T012258 | - | - |
| CRO_T012612 | AT4G40045 (1.00E-11) | unknown protein |
| CRO_T012984 | - | - |
| CRO_T019119 | - | - |
| CRO_T020556 | AT3G18240 (2.00E-118) | Ribosomal protein S24/S35, mitochondrial |
| CRO_T020709 | - | - |
| CRO_T021486 | AT5G64150 (3.00E-58) | RNA methyltransferase family protein |
| CRO_T021552 | AT1G64260 (5.00E-12) | MuDR family transposase |
| CRO_T021606 | - | - |
| CRO_T022510 | - | - |
| CRO_T022763 | - | - |
| CRO_T023841 | - | - |
| CRO_T024499 | - | - |
| CRO_T025630 | - | - |
| CRO_T026439 | - | - |
| CRO_T028060 | - | - |
| CRO_T028334 | - | - |
| CRO_T029903 | - | - |
| CRO_T030209 | - | - |
| CRO_T031256 | - | - |
| CRO_T033222 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000008 | Ubiquitin_Proteasome_system, E3 adaptor: SKP1 | details |
| TreatCFM000017 | Oxidative phosphorylation mitochondrion NADH dehydrogenase (ubiquinone) activity mitochondrial inner membrane heme transporter activity heme transport cytochrome-c oxidase activity respiratory chain cytochrome complex assembly hydrogen ion transmembrane transport ATP synthesis coupled electron transport heme binding aerobic respiration hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances aerobic electron transport chain electron transport chain generation of precursor metabolites and energy ATP synthesis coupled proton transport mitochondrial electron transport, NADH to ubiquinone hydrogen ion transmembrane transporter activity quinone binding photosynthetic electron transport in photosystem II succinate dehydrogenase activity electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity succinate dehydrogenase complex | details |
| TreatCFM000024 | Arp2/3 protein complex Arp2/3 complex-mediated actin nucleation mitochondrial small ribosomal subunit protein methylation protein methyltransferase activity apigenin glycosides biosynthesis genistin gentiobioside biosynthesis kaempferol gentiobioside biosynthesis luteolin glycosides biosynthesis myricetin gentiobioside biosynthesis | details |
| TreatCFM000025 | lignin biosynthetic process lignin catabolic process hydroquinone:oxygen oxidoreductase activity oxidoreductase activity, oxidizing metal ions | details |
| TreatCFM000039 | details | |
| TreatCFM000068 | Ubiquitin_Proteasome_system, E2: UBC | details |
| TreatCFM000132 | Glutathione metabolism | details |
| TreatCFM000178 | cell tip growth mitotic spindle assembly checkpoint | details |
| TreatCFM000205 | details | |
| TreatCFM000277 | protein methylation protein methyltransferase activity apigenin glycosides biosynthesis genistin gentiobioside biosynthesis kaempferol gentiobioside biosynthesis luteolin glycosides biosynthesis myricetin gentiobioside biosynthesis curcumin glucoside biosynthesis sesaminol glucoside biosynthesis quercetin gentiotetraside biosynthesis transferase activity, transferring glycosyl groups formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM000297 | formation of glycosidic bonds, GlycosylTransferases: GTnc alpha-1,4-glucan synthase activity starch synthase activity amylopectin biosynthetic process glycogen (starch) synthase activity | details |
| TreatCFM000310 | Cyanoamino acid metabolism cyanide biosynthetic process protein methylation | details |
| TreatCFM000345 | DNA-directed RNA polymerase activity Purine metabolism protein methyltransferase activity protein methylation Transcription_related, Transcription factor: HB | details |
| TreatCFM000493 | details | |
| TreatCFM000554 | protein methylation protein methyltransferase activity | details |
| TreatCFM000585 | formation of glycosidic bonds, GlycosylTransferases: GTnc starch synthase activity alpha-1,4-glucan synthase activity amylopectin biosynthetic process glycogen (starch) synthase activity starch biosynthetic process amyloplast Starch and sucrose metabolism secondary metabolite biosynthetic process | details |
| TreatCFM000826 | mRNA surveillance pathway Biotin metabolism Renin-angiotensin system Ubiquitin_Proteasome_system, E3: HECT biotin synthase activity serine-type exopeptidase activity | details |
| TreatCFM000880 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity phytol kinase activity phytol salvage pathway protein methyltransferase activity vitamin E biosynthetic process protein methylation regulation of signal transduction gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt | details |
| TreatCFM000927 | details | |
| TreatCFM000963 | intracellular protein transport phosphatidylethanolamine biosynthesis I 1-phosphatidylinositol 4-kinase activity protein methyltransferase activity voltage-gated chloride channel activity protein methylation chloride transport phosphatidylinositol-mediated signaling 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis Ran GTPase binding regulation of anion transmembrane transport phosphatidylinositol phosphorylation unidimensional cell growth ion transmembrane transport Inositol phosphate metabolism Lysosome clathrin adaptor complex protein transporter activity vesicle-mediated transport RNA transport integral component of membrane | details |
| TreatCFM001237 | protein ubiquitination involved in ubiquitin-dependent protein catabolic process TOR signaling PI3K-Akt signaling pathway TORC1 complex viral envelope Ubiquitin_Proteasome_system, E3: HECT protein polyubiquitination protein peptidyl-prolyl isomerization chaperone-mediated protein folding Ubiquitin mediated proteolysis proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM002001 | chaperone-mediated protein folding cytoplasmic translation FK506 binding peptidyl-prolyl cis-trans isomerase activity | details |
Expression profiles
 Show details about module gene expression profiling |