TreatCFM001609's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| mRNA guanylyltransferase activity | 0.004417374 | GO:0004484 |
| polynucleotide 5'-phosphatase activity | 0.004417374 | GO:0004651 |
| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity | 0.004417374 | GO:0046537 |
| arylformamidase activity | 0.004417374 | GO:0004061 |
| tryptophan catabolic process to kynurenine | 0.004514311 | GO:0019441 |
| DNA ligation | 0.004514311 | GO:0006266 |
| polynucleotide 5' dephosphorylation | 0.004514311 | GO:0098507 |
| 7-methylguanosine mRNA capping | 0.005642055 | GO:0006370 |
| phospholipid-translocating ATPase activity | 0.010090142 | GO:0004012 |
| protein tyrosine/serine/threonine phosphatase activity | 0.010090142 | GO:0008138 |
| DNA ligase (ATP) activity | 0.010090142 | GO:0003910 |
| phospholipid translocation | 0.010827144 | GO:0045332 |
| peptidyl-tyrosine dephosphorylation | 0.014278428 | GO:0035335 |
| protein tyrosine phosphatase activity | 0.014706095 | GO:0004725 |
| mRNA surveillance pathway | 0.014804758 | KEGG pathway |
| DNA recombination | 0.016096353 | GO:0006310 |
| gluconeogenesis I | 0.019505234 | plantCyc |
| glycolysis I (from glucose 6-phosphate) | 0.019505234 | plantCyc |
| glycolysis IV (plant cytosol) | 0.019505234 | plantCyc |
| Rubisco shunt | 0.019505234 | plantCyc |
| DNA repair | 0.036511149 | GO:0006281 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T010122 | AT1G54280 (0) | ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein |
| CRO_T013978 | AT1G03080 (1.00E-64) | NET1D|Networked 1D |
| CRO_T015964 | AT1G52080 (5.00E-73) | AR791|actin binding protein family |
| CRO_T024419 | AT3G30841 (0) | Cofactor-independent phosphoglycerate mutase |
| CRO_T026945 | AT4G35220 (1.00E-35) | Cyclase family protein |
| CRO_T032772 | AT3G09100 (5.00E-86) | mRNA capping enzyme family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000339 | DNA ligation protein initiator methionine removal polynucleotide 5' dephosphorylation 7-methylguanosine mRNA capping polynucleotide 5'-phosphatase activity mRNA guanylyltransferase activity metalloaminopeptidase activity 1-phosphatidylinositol 4-kinase activity protein tyrosine/serine/threonine phosphatase activity DNA ligase (ATP) activity mRNA surveillance pathway 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis homogalacturonan degradation hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 Transcription_related, Transcription factor: NAC protein tyrosine phosphatase activity cytosolic ribosome phosphatidylinositol phosphorylation DNA recombination peptidyl-tyrosine dephosphorylation protein peptidyl-prolyl isomerization | details |
| TreatCFM000758 | response to aluminum ion response to acidic pH regulation of apoptotic process negative regulation of mRNA splicing, via spliceosome ATP metabolic process 4-aminobutanoate degradation I 4-aminobutanoate degradation IV proton-transporting V-type ATPase, V1 domain benzoate biosynthesis III (CoA-dependent, non-β-oxidative) fatty acid α-oxidation I fatty acid elongation -- saturated L-glutamate degradation IV cellular component organization chaperone-mediated protein folding phosphatidylinositol phosphorylation | details |
| TreatCFM000880 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity phytol kinase activity phytol salvage pathway protein methyltransferase activity vitamin E biosynthetic process protein methylation regulation of signal transduction gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt | details |
| TreatCFM001452 | UDP-N-acetyl-D-glucosamine biosynthesis II mRNA guanylyltransferase activity glutamine-fructose-6-phosphate transaminase (isomerizing) activity polynucleotide 5'-phosphatase activity serine-type endopeptidase activity serine-type exopeptidase activity 7-methylguanosine mRNA capping UDP-N-acetylglucosamine metabolic process carbohydrate derivative biosynthetic process polynucleotide 5' dephosphorylation proteolysis DNA ligation voltage-gated chloride channel activity protein tyrosine/serine/threonine phosphatase activity DNA ligase (ATP) activity Renin-angiotensin system chloride transport fructose 6-phosphate metabolic process cellular macromolecule biosynthetic process regulation of anion transmembrane transport Cell cycle - Caulobacter peptidyl-tyrosine dephosphorylation protein tyrosine phosphatase activity DNA recombination unidimensional cell growth DNA metabolic process ion transmembrane transport nucleotidyltransferase activity Amino sugar and nucleotide sugar metabolism mRNA surveillance pathway DNA repair | details |
| TreatCFM001778 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity signal recognition particle receptor complex signal recognition particle binding SRP-dependent cotranslational protein targeting to membrane cytoplasmic translation gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt Protein export | details |
| TreatCFM002127 | DNA ligation polynucleotide 5' dephosphorylation 7-methylguanosine mRNA capping mRNA guanylyltransferase activity polynucleotide 5'-phosphatase activity Cell cycle - Caulobacter DNA ligase (ATP) activity protein tyrosine/serine/threonine phosphatase activity cellular macromolecule biosynthetic process mRNA surveillance pathway peptidyl-tyrosine dephosphorylation DNA recombination protein tyrosine phosphatase activity DNA metabolic process nucleotidyltransferase activity proteasome-mediated ubiquitin-dependent protein catabolic process DNA repair | details |
Expression profiles
 Show details about module gene expression profiling |