TreatCFM001413's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| outer membrane-bounded periplasmic space | 0.002465189 | GO:0030288 |
| intracellular | 0.002465189 | GO:0005622 |
| protoheme IX ABC transporter activity | 0.003754544 | GO:0103115 |
| heme-transporting ATPase activity | 0.003754544 | GO:0015439 |
| Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase | 0.006894174 | kinase family |
| cytochrome complex assembly | 0.026298189 | GO:0017004 |
| tRNA modification | 0.026298189 | GO:0006400 |
| heme transport | 0.026298189 | GO:0015886 |
| Transcription_related, Transcription regulator: PHD | 0.027508326 | TF family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005327 | AT3G05670 (6.00E-68) | RING/U-box protein |
| CRO_T009348 | AT3G52240 (3.00E-11) | unknown protein |
| CRO_T011108 | AT5G01760 (5.00E-68) | ENTH/VHS/GAT family protein |
| CRO_T018329 | AT5G05210 (1.00E-36) | Surfeit locus protein 6 |
| CRO_T020966 | AT2G44430 (5.00E-53) | DNA-binding bromodomain-containing protein |
| CRO_T026075 | AT1G78010 (2.00E-49) | tRNA modification GTPase, putative |
| CRO_T026469 | AT1G67940 (2.00E-15) | ABCI17|ATP-binding cassette I17; ATNAP3|non-intrinsic ABC protein 3 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001141 | Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) tRNA modification cytoplasmic translation Transcription_related, Transcription factor: NF-YC Transcription_related, Transcription regulator: PHD | details |
| TreatCFM001264 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides nuclease activity interstrand cross-link repair box C/D snoRNP complex U4/U6 x U5 tri-snRNP complex Fanconi anemia pathway precatalytic spliceosome maturation of SSU-rRNA maturation of LSU-rRNA zinc ion binding small-subunit processome nucleic acid phosphodiester bond hydrolysis RNA processing mRNA splicing, via spliceosome cytosolic large ribosomal subunit Spliceosome | details |
| TreatCFM001273 | outer membrane-bounded periplasmic space intracellular protoheme IX ABC transporter activity heme-transporting ATPase activity coenzyme A transmembrane transporter activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc homogalacturonan degradation coenzyme A transmembrane transport heme transport cytochrome complex assembly tRNA modification hydrolase activity, acting on glycosyl bonds mitochondrial inner membrane | details |
| TreatCFM001349 | interstrand cross-link repair Fanconi anemia pathway hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides nuclease activity nucleic acid phosphodiester bond hydrolysis | details |
| TreatCFM001414 | protoheme IX ABC transporter activity heme-transporting ATPase activity intracellular outer membrane-bounded periplasmic space coenzyme A transmembrane transporter activity coenzyme A transmembrane transport cytoplasmic mRNA processing body assembly deadenylation-dependent decapping of nuclear-transcribed mRNA RNA degradation heme transport cytochrome complex assembly cytoplasmic mRNA processing body tRNA modification protein peptidyl-prolyl isomerization integral component of membrane peptidyl-prolyl cis-trans isomerase activity mitochondrial inner membrane trans-Golgi network endosome | details |
| TreatCFM002152 | spermidine synthase activity putrescine N-methyltransferase activity phosphopyruvate hydratase activity phosphopyruvate hydratase complex spermidine biosynthetic process tRNA modification glycolytic process spermidine biosynthesis I gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt Cysteine and methionine metabolism | details |
Expression profiles
 Show details about module gene expression profiling |