TreatCFM001414's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| protoheme IX ABC transporter activity | 0.004514645 | GO:0103115 |
| heme-transporting ATPase activity | 0.004514645 | GO:0015439 |
| intracellular | 0.005836621 | GO:0005622 |
| outer membrane-bounded periplasmic space | 0.005836621 | GO:0030288 |
| coenzyme A transmembrane transporter activity | 0.006018637 | GO:0015228 |
| coenzyme A transmembrane transport | 0.011777052 | GO:0035349 |
| cytoplasmic mRNA processing body assembly | 0.011777052 | GO:0033962 |
| deadenylation-dependent decapping of nuclear-transcribed mRNA | 0.011777052 | GO:0000290 |
| RNA degradation | 0.013051924 | KEGG pathway |
| heme transport | 0.020597662 | GO:0015886 |
| cytochrome complex assembly | 0.022354916 | GO:0017004 |
| cytoplasmic mRNA processing body | 0.022496655 | GO:0000932 |
| tRNA modification | 0.025479267 | GO:0006400 |
| protein peptidyl-prolyl isomerization | 0.028542303 | GO:0000413 |
| integral component of membrane | 0.03965079 | GO:0016021 |
| peptidyl-prolyl cis-trans isomerase activity | 0.047263877 | GO:0003755 |
| mitochondrial inner membrane | 0.047378485 | GO:0005743 |
| trans-Golgi network | 0.048814253 | GO:0005802 |
| endosome | 0.048814253 | GO:0005768 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002553 | AT1G79090 (0) | unknown protein |
| CRO_T003668 | AT1G14560 (4.00E-131) | CoAc1|CoA Carrier 1 |
| CRO_T010811 | AT1G26940 (8.00E-91) | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein |
| CRO_T011108 | AT5G01760 (5.00E-68) | ENTH/VHS/GAT family protein |
| CRO_T026075 | AT1G78010 (2.00E-49) | tRNA modification GTPase, putative |
| CRO_T026469 | AT1G67940 (2.00E-15) | ABCI17|ATP-binding cassette I17; ATNAP3|non-intrinsic ABC protein 3 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001141 | Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) tRNA modification cytoplasmic translation Transcription_related, Transcription factor: NF-YC Transcription_related, Transcription regulator: PHD | details |
| TreatCFM001273 | outer membrane-bounded periplasmic space intracellular protoheme IX ABC transporter activity heme-transporting ATPase activity coenzyme A transmembrane transporter activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc homogalacturonan degradation coenzyme A transmembrane transport heme transport cytochrome complex assembly tRNA modification hydrolase activity, acting on glycosyl bonds mitochondrial inner membrane | details |
| TreatCFM001413 | outer membrane-bounded periplasmic space intracellular protoheme IX ABC transporter activity heme-transporting ATPase activity Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase cytochrome complex assembly tRNA modification heme transport Transcription_related, Transcription regulator: PHD | details |
| TreatCFM001784 | nuclear pore inner ring structural constituent of nuclear pore RNA binding cytoplasmic mRNA processing body assembly deadenylation-dependent decapping of nuclear-transcribed mRNA production of small RNA involved in gene silencing by RNA nuclear pore organization posttranscriptional gene silencing by RNA Transcription_related, Transcription factor: E2F-DP protein import into nucleus, docking cytoplasmic mRNA processing body RNA degradation mRNA processing Transcription_related, Transcription factor: B3 | details |
| TreatCFM001818 | RNA degradation porin activity AU-rich element binding voltage-gated cation channel activity integral component of chloroplast outer membrane etioplast membrane pore complex Cellular senescence exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay deadenylation-dependent decapping of nuclear-transcribed mRNA U1 snRNA 3'-end processing U5 snRNA 3'-end processing regulation of ion transmembrane transport exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) nuclear polyadenylation-dependent tRNA catabolic process cytoplasmic mRNA processing body assembly nuclear polyadenylation-dependent mRNA catabolic process nuclear polyadenylation-dependent rRNA catabolic process nuclear mRNA surveillance U4 snRNA 3'-end processing nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' cytoplasmic exosome (RNase complex) nuclear exosome (RNase complex) Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase cellular macromolecule biosynthetic process cytoplasmic mRNA processing body DNA metabolic process Transcription_related, Transcription factor: B3 | details |
| TreatCFM001972 | formation of glycosidic bonds, GlycosylTransferases: GTnc deadenylation-dependent decapping of nuclear-transcribed mRNA cytoplasmic mRNA processing body assembly Other types of O-glycan biosynthesis RNA degradation cytoplasmic mRNA processing body cell wall organization | details |
| TreatCFM001973 | formation of glycosidic bonds, GlycosylTransferases: GTnc reactive oxygen species degradation superoxide radicals degradation Other types of O-glycan biosynthesis deadenylation-dependent decapping of nuclear-transcribed mRNA cytoplasmic mRNA processing body assembly catalase activity response to hydrogen peroxide RNA degradation hydrogen peroxide catabolic process cytoplasmic mRNA processing body Golgi membrane Peroxisome | details |
| TreatCFM002152 | spermidine synthase activity putrescine N-methyltransferase activity phosphopyruvate hydratase activity phosphopyruvate hydratase complex spermidine biosynthetic process tRNA modification glycolytic process spermidine biosynthesis I gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt Cysteine and methionine metabolism | details |
Expression profiles
 Show details about module gene expression profiling |