TreatCFM001188's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Cell cycle - yeast | 0.009739531 | KEGG pathway |
| MAPK signaling pathway | 0.009739531 | KEGG pathway |
| mitotic chromosome condensation | 0.014165434 | GO:0007076 |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.014307688 | cazy family |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.014307688 | cazy family |
| microtubule cytoskeleton | 0.014326635 | GO:0015630 |
| cytoskeletal part | 0.014326635 | GO:0044430 |
| protein disulfide isomerase activity | 0.023617964 | GO:0003756 |
| cell | 0.032064737 | GO:0005623 |
| regulation of cellular process | 0.038253536 | GO:0050794 |
| cell redox homeostasis | 0.038253536 | GO:0045454 |
| cell division | 0.038253536 | GO:0051301 |
| polysaccharide binding | 0.044872314 | GO:0030247 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006413 | AT1G03780 (6.00E-110) | TPX2|targeting protein for XKLP2 |
| CRO_T013536 | AT4G17180 (0) | O-Glycosyl hydrolases family 17 protein |
| CRO_T013808 | AT5G60640 (2.00E-18) | ATPDI2|PROTEIN DISULFIDE ISOMERASE 2; ATPDIL1-4|PDI-like 1-4 |
| CRO_T015356 | AT3G57060 (0) | binding |
| CRO_T020780 | AT5G63870 (9.00E-48) | PP7|serine/threonine phosphatase 7 |
| CRO_T027066 | AT5G03990 (3.00E-33) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000650 | protein ubiquitination acetylglucosaminyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII Ubiquitin_Proteasome_system, E3: U-box | details |
| TreatCFM001035 | Peroxisome thioredoxin pathway sesamin biosynthesis Cytochrome_P450, Cytochrome P450: CYP81D Protein_kinases_phosphatases, PPC:1.3.2: Leucine Rich Repeat Receptor VIII cytoskeletal part microtubule cytoskeleton steroid metabolic process | details |
| TreatCFM001103 | adenine and adenosine salvage II Transcription_related, Transcription factor: OFP phospholipase activity adenine phosphoribosyltransferase activity acylglycerol lipase activity adenine salvage microtubule cytoskeleton cytoskeletal part nucleoside metabolic process lipid catabolic process FMN binding cytoplasm antiporter activity drug transmembrane transporter activity regulation of cellular process drug transmembrane transport | details |
| TreatCFM001517 | Plant-pathogen interaction Cytochrome_P450, Cytochrome P450: CYP81K folate polyglutamylation II glutamate removal from folates UDP-D-galactose biosynthesis UDP-L-arabinose biosynthesis I (from UDP-xylose) peptide-methionine (S)-S-oxide reductase activity gamma-glutamyl-peptidase activity Cytochrome_P450, Cytochrome P450: CYP81D UDP-glucose 4-epimerase activity D-galactose degradation III Cell cycle - yeast Folate biosynthesis tetrahydrofolylpolyglutamate metabolic process chromosome condensation condensed chromosome microtubule cytoskeleton cytoskeletal part UDP-sugars interconversion stachyose degradation Galactose metabolism ADP binding sesamin biosynthesis protein repair indole glucosinolate metabolic process defense response to other organism mitotic nuclear division galactose metabolic process glutamine metabolic process | details |
| TreatCFM001612 | post-embryonic root development Ubiquitin_Proteasome_system, E1: ThiF MAPK signaling pathway MAPK signaling pathway - yeast protein neddylation removal of superoxide radicals oxalate metabolic process NEDD8 activating enzyme activity acid-amino acid ligase activity cellular protein metabolic process oxalate decarboxylase activity protein domain specific binding superoxide dismutase activity nutrient reservoir activity manganese ion binding Ubiquitin mediated proteolysis | details |
| TreatCFM002068 | homogalacturonan biosynthesis Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV pectin biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc polygalacturonate 4-alpha-galacturonosyltransferase activity Antigen processing and presentation MAPK signaling pathway NF-kappa B signaling pathway cell wall organization Amino sugar and nucleotide sugar metabolism | details |
| TreatCFM002129 | cell cell redox homeostasis microtubule cytoskeleton cytoskeletal part thioredoxin pathway MAPK signaling pathway Stilbenoid, diarylheptanoid and gingerol biosynthesis vindoline and vinblastine biosynthesis 11-O-demethyl-17-O-deacetylvindoline O-methyltransferase activity protein disulfide isomerase activity myricetin 3'-O-methyltransferase activity aromatic compound biosynthetic process alkaloid biosynthetic process regulation of cellular process protein disulfide oxidoreductase activity protein homodimerization activity electron carrier activity | details |
| TreatCFM002164 | methylated histone binding Cell cycle - Caulobacter MAPK signaling pathway peptidyl-lysine monomethylation response to reactive oxygen species regulation of gene expression protein-lysine N-methyltransferase activity Transcription_related, Transcription regulator: SET | details |
Expression profiles
 Show details about module gene expression profiling |