TreatCFM002151's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 7.72E-05 | cazy family |
| dolichyl-phosphate beta-D-mannosyltransferase activity | 0.005719772 | GO:0004582 |
| dolichyl-phosphate beta-glucosyltransferase activity | 0.005719772 | GO:0004581 |
| dolichyl-phosphate-mannose-protein mannosyltransferase activity | 0.005719772 | GO:0004169 |
| dolichol metabolic process | 0.00923032 | GO:0019348 |
| singlet oxygen-mediated programmed cell death | 0.00923032 | GO:0010343 |
| protein O-linked mannosylation | 0.00923032 | GO:0035269 |
| hydrolase activity | 0.011866624 | GO:0016787 |
| tetrapyrrole biosynthesis I (from glutamate) | 0.013773076 | plantCyc |
| xylan biosynthesis | 0.013773076 | plantCyc |
| protein N-glycosylation (eukaryotic, high mannose) | 0.015070764 | plantCyc |
| Indole alkaloid biosynthesis | 0.015586476 | KEGG pathway |
| ajmaline and sarpagine biosynthesis | 0.015711386 | plantCyc |
| protein N-linked glycosylation | 0.016600834 | GO:0006487 |
| GPI anchor biosynthetic process | 0.016600834 | GO:0006506 |
| cellulose synthase (UDP-forming) activity | 0.023963488 | GO:0016760 |
| thylakoid membrane | 0.029660667 | GO:0042651 |
| N-Glycan biosynthesis | 0.033631312 | KEGG pathway |
| unfolded protein binding | 0.039116606 | GO:0051082 |
| cellulose biosynthetic process | 0.044835234 | GO:0030244 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002773 | AT5G19930 (6.00E-74) | Protein of unknown function DUF92, transmembrane |
| CRO_T006650 | AT1G27510 (1.00E-167) | EX2|EXECUTER 2 |
| CRO_T008061 | AT2G04030 (4.00E-108) | AtHsp90.5|HEAT SHOCK PROTEIN 90.5; EMB1956|EMBRYO DEFECTIVE 1956; Hsp88.1|HEAT SHOCK PROTEIN 88.1 |
| CRO_T008387 | AT2G39630 (2.00E-79) | Nucleotide-diphospho-sugar transferases superfamily protein |
| CRO_T011048 | AT1G02730 (0) | ATCSLD5|cellulose synthase-like D5; CSLD5|CELLULOSE SYNTHASE LIKE D5; SOS6|SALT OVERLY SENSITIVE 6 |
| CRO_T017238 | AT5G24460 (5.00E-65) | unknown protein |
| CRO_T019052 | AT3G53700 (0) | MEE40|maternal effect embryo arrest 40 |
| CRO_T030883 | AT2G23610 (2.00E-54) | ATMES3|METHYL ESTERASE 3 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000408 | Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase Indole alkaloid biosynthesis BLOC-1 complex plastid nucleoid Transcription_related, Transcription factor: LOB phosphatidylinositol dephosphorylation fructose 6-phosphate metabolic process glycolytic process through fructose-6-phosphate response to light intensity Golgi vesicle budding phospholipid translocation ajmaline and sarpagine biosynthesis D-myo-inositol (1,4,5)-trisphosphate degradation glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) | details |
| TreatCFM001215 | glycolytic process sucrose biosynthesis I (from photosynthesis) gluconeogenesis I glycolysis I (from glucose 6-phosphate) gluconeogenesis glucose-6-phosphate isomerase activity phosphatidate phosphatase activity fructose-bisphosphate aldolase activity Carbon metabolism Indole alkaloid biosynthesis GDP-mannose biosynthesis sucrose degradation III (sucrose invertase) starch biosynthesis sucrose biosynthesis II ajmaline and sarpagine biosynthesis Calvin-Benson-Bassham cycle diacylglycerol and triacylglycerol biosynthesis glycolysis IV (plant cytosol) Glycerolipid metabolism Ribosome biogenesis in eukaryotes | details |
| TreatCFM001615 | integral component of membrane Indole alkaloid biosynthesis ajmaline and sarpagine biosynthesis xylan biosynthesis xylogalacturonan biosynthesis calcium:proton antiporter activity Ribosome biogenesis in eukaryotes formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: NAC cellulose synthase (UDP-forming) activity | details |
| TreatCFM001686 | UDP-glucose transmembrane transporter activity dolichyl-phosphate beta-D-mannosyltransferase activity dolichyl-phosphate beta-glucosyltransferase activity UDP-galactose transmembrane transporter activity dolichyl-phosphate-mannose-protein mannosyltransferase activity lateral root development UDP-glucose transport heme biosynthetic process photosystem II stabilization root hair cell development UDP-galactose transmembrane transport dolichol metabolic process protein O-linked mannosylation cell morphogenesis cytoskeleton organization GPI anchor biosynthetic process protein N-linked glycosylation Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) heme biosynthesis I (aerobic) protein N-glycosylation (eukaryotic, high mannose) formation of glycosidic bonds, GlycosylTransferases: GTnc N-Glycan biosynthesis Porphyrin and chlorophyll metabolism actin binding chloroplast part | details |
| TreatCFM001859 | tetrapyrrole biosynthesis I (from glutamate) hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Phagosome microtubule-based process structural constituent of cytoskeleton beta-galactosidase activity response to stress | details |
| TreatCFM001883 | allantoin degradation to ureidoglycolate II (ammonia producing) tetrapyrrole biosynthesis I (from glutamate) GTP binding hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines metal ion transmembrane transporter activity protein tyrosine phosphatase activity structural constituent of cytoskeleton cellular nitrogen compound catabolic process Phagosome organic substance metabolic process microtubule-based process peptidyl-tyrosine dephosphorylation unfolded protein binding primary metabolic process metal ion transport response to stress | details |
| TreatCFM001943 | cellulose biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription regulator: GNAT Transcription_related, Transcription regulator: mTERF male meiosis cytokinesis embryo sac cellularization radial microtubular system formation singlet oxygen-mediated programmed cell death cell plate assembly megagametogenesis pollen tube phragmoplast nucleus thylakoid membrane post-embryonic development regulation of transcription, DNA-templated pollen development rRNA processing cellulose biosynthetic process RNA secondary structure unwinding microtubule-based movement kinesin complex | details |
| TreatCFM001970 | UDP-galactose transmembrane transporter activity UDP-glucose transmembrane transporter activity 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity UDP-glucose transport root hair cell development lateral root development regulation of pentose-phosphate shunt UDP-galactose transmembrane transport gluconeogenesis glycolysis I (from glucose 6-phosphate) glycolytic process Transcription_related, Transcription factor: WRKY Carbon metabolism embryo development ending in seed dormancy methyltransferase activity | details |
| TreatCFM002085 | L-arginine biosynthesis II (acetyl cycle) L-ornithine biosynthesis I tetrapyrrole biosynthesis I (from glutamate) Transcription_related, Transcription regulator: GNAT acetyl-CoA:L-glutamate N-acetyltransferase activity metal ion transmembrane transporter activity ATP-dependent helicase activity 2-Oxocarboxylic acid metabolism arginine biosynthetic process DNA recombination metal ion transport unfolded protein binding response to stress | details |
| TreatCFM002141 | NADP biosynthetic process phosphorylation NAD metabolic process isopentenyl diphosphate biosynthetic process, mevalonate pathway heme biosynthetic process diphosphomevalonate decarboxylase activity NAD+ kinase activity Indole alkaloid biosynthesis Nicotinate and nicotinamide metabolism heme biosynthesis I (aerobic) mevalonate pathway I 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) ajmaline and sarpagine biosynthesis NAD/NADH phosphorylation and dephosphorylation Transcription_related, Transcription factor: MYB chloroplast part Porphyrin and chlorophyll metabolism Terpenoid backbone biosynthesis | details |
Expression profiles
 Show details about module gene expression profiling |