TreatCFM000408's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase | 0.009744572 | kinase family |
| Indole alkaloid biosynthesis | 0.029185392 | KEGG pathway |
| BLOC-1 complex | 0.036623412 | GO:0031083 |
| plastid nucleoid | 0.036623412 | GO:0042646 |
| Transcription_related, Transcription factor: LOB | 0.039956147 | TF family |
| phosphatidylinositol dephosphorylation | 0.047838983 | GO:0046856 |
| fructose 6-phosphate metabolic process | 0.047838983 | GO:0006002 |
| glycolytic process through fructose-6-phosphate | 0.047838983 | GO:0061615 |
| response to light intensity | 0.047838983 | GO:0009642 |
| Golgi vesicle budding | 0.047838983 | GO:0048194 |
| phospholipid translocation | 0.047838983 | GO:0045332 |
| ajmaline and sarpagine biosynthesis | 0.048414843 | plantCyc |
| D-myo-inositol (1,4,5)-trisphosphate degradation | 0.048414843 | plantCyc |
| glycolysis I (from glucose 6-phosphate) | 0.048414843 | plantCyc |
| glycolysis IV (plant cytosol) | 0.048414843 | plantCyc |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000965 | AT5G63100 (4.00E-89) | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| CRO_T007452 | AT1G79070 (1.00E-18) | SNARE-associated protein-related |
| CRO_T008442 | AT1G10522 (7.00E-45) | PRIN2|PLASTID REDOX INSENSITIVE 2 |
| CRO_T010322 | AT4G01510 (1.00E-42) | ARV2|Arv1-like protein |
| CRO_T011100 | AT2G05755 (1.00E-52) | Nodulin MtN21 /EamA-like transporter family protein |
| CRO_T011588 | AT1G12000 (1.00E-09) | Phosphofructokinase family protein |
| CRO_T012841 | AT1G13210 (0) | ACA.l|autoinhibited Ca2+/ATPase II |
| CRO_T015174 | AT1G05630 (0) | 5PTASE13|inositol-polyphosphate 5-phosphatase 13 |
| CRO_T015465 | AT2G02450 (2.00E-86) | ANAC034|Arabidopsis NAC domain containing protein 34; ANAC035|NAC domain containing protein 35; LOV1|LONG VEGETATIVE PHASE 1 |
| CRO_T015681 | AT3G15010 (8.00E-15) | RNA-binding (RRM/RBD/RNP motifs) family protein |
| CRO_T016904 | AT5G20610 (0) | unknown protein |
| CRO_T028792 | AT5G08160 (3.00E-56) | ATPK3|serine/threonine protein kinase 3 |
| CRO_T029773 | AT2G11890 (9.00E-31) | TTM3|Triphosphate Tunnel Metalloenzyme 3 |
| CRO_T029900 | AT5G66870 (2.00E-57) | ASL1|ASYMMETRIC LEAVES 2-like 1; LBD36|LATERAL ORGAN BOUNDARIES DOMAIN GENE 36 |
| CRO_T030883 | AT2G23610 (2.00E-54) | ATMES3|METHYL ESTERASE 3 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000094 | Transcription_related, Transcription regulator: MED6 D-myo-inositol (1,4,5)-trisphosphate degradation ethylene biosynthesis I (plants) L-methionine salvage cycle II (plants) | details |
| TreatCFM000170 | pyruvate fermentation to ethanol II ribonuclease inhibitor activity oxaloacetate decarboxylase activity 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity carboxy-lyase activity RNA methyltransferase activity thiamine pyrophosphate binding | details |
| TreatCFM000266 | outer membrane | details |
| TreatCFM000620 | glycerol-3-phosphate shuttle Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase Glycerophospholipid metabolism glycerol-3-phosphate dehydrogenase complex carboxypeptidase activity protein serine/threonine kinase activity glycerol-3-phosphate dehydrogenase [NAD+] activity glycerol-3-phosphate catabolic process serine-type carboxypeptidase activity cell surface receptor signaling pathway NAD binding | details |
| TreatCFM001215 | glycolytic process sucrose biosynthesis I (from photosynthesis) gluconeogenesis I glycolysis I (from glucose 6-phosphate) gluconeogenesis glucose-6-phosphate isomerase activity phosphatidate phosphatase activity fructose-bisphosphate aldolase activity Carbon metabolism Indole alkaloid biosynthesis GDP-mannose biosynthesis sucrose degradation III (sucrose invertase) starch biosynthesis sucrose biosynthesis II ajmaline and sarpagine biosynthesis Calvin-Benson-Bassham cycle diacylglycerol and triacylglycerol biosynthesis glycolysis IV (plant cytosol) Glycerolipid metabolism Ribosome biogenesis in eukaryotes | details |
| TreatCFM001290 | Protein_kinases_phosphatases, PPC:4.2.3: Calcium/Calmodulin Dependent Protein Kinase (CCamK) response to endoplasmic reticulum stress Plant-pathogen interaction | details |
| TreatCFM001330 | formation of glycosidic bonds, GlycosylTransferases: GTnc ribonuclease inhibitor activity triphosphatase activity oxaloacetate decarboxylase activity 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity regulation of RNA metabolic process protein targeting to ER response to light intensity plastid nucleoid signal recognition particle binding signal recognition particle, endoplasmic reticulum targeting Protein export regulation of gene expression negative regulation of catalytic activity root development | details |
| TreatCFM001463 | MAPK signaling pathway plastid nucleoid response to light intensity Transcription_related, Transcription factor: NAC regulation of gene expression | details |
| TreatCFM001464 | MAPK signaling pathway response to light intensity plastid nucleoid regulation of gene expression Transcription_related, Transcription factor: C2H2 | details |
| TreatCFM001513 | MAPK signaling pathway D-myo-inositol (1,4,5)-trisphosphate degradation xylan biosynthesis plastid nucleoid exonuclease activity response to light intensity endonuclease activity cellulose synthase (UDP-forming) activity phosphatidylinositol dephosphorylation regulation of gene expression Transcription_related, Transcription factor: NAC cellulose biosynthetic process | details |
| TreatCFM001615 | integral component of membrane Indole alkaloid biosynthesis ajmaline and sarpagine biosynthesis xylan biosynthesis xylogalacturonan biosynthesis calcium:proton antiporter activity Ribosome biogenesis in eukaryotes formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: NAC cellulose synthase (UDP-forming) activity | details |
| TreatCFM001869 | glutathione-glutaredoxin redox reactions glutathione-peroxide redox reactions Glutathione metabolism calcium-dependent cysteine-type endopeptidase activity glutathione-disulfide reductase activity Ubiquitin_Proteasome_system, E3 adaptor: F-box NADP binding | details |
| TreatCFM002141 | NADP biosynthetic process phosphorylation NAD metabolic process isopentenyl diphosphate biosynthetic process, mevalonate pathway heme biosynthetic process diphosphomevalonate decarboxylase activity NAD+ kinase activity Indole alkaloid biosynthesis Nicotinate and nicotinamide metabolism heme biosynthesis I (aerobic) mevalonate pathway I 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) ajmaline and sarpagine biosynthesis NAD/NADH phosphorylation and dephosphorylation Transcription_related, Transcription factor: MYB chloroplast part Porphyrin and chlorophyll metabolism Terpenoid backbone biosynthesis | details |
| TreatCFM002151 | formation of glycosidic bonds, GlycosylTransferases: GTnc dolichyl-phosphate beta-D-mannosyltransferase activity dolichyl-phosphate beta-glucosyltransferase activity dolichyl-phosphate-mannose-protein mannosyltransferase activity dolichol metabolic process singlet oxygen-mediated programmed cell death protein O-linked mannosylation hydrolase activity tetrapyrrole biosynthesis I (from glutamate) xylan biosynthesis protein N-glycosylation (eukaryotic, high mannose) Indole alkaloid biosynthesis ajmaline and sarpagine biosynthesis protein N-linked glycosylation GPI anchor biosynthetic process cellulose synthase (UDP-forming) activity thylakoid membrane N-Glycan biosynthesis unfolded protein binding cellulose biosynthetic process | details |
Expression profiles
 Show details about module gene expression profiling |