TreatCFM001237's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 0.000657511 | GO:0042787 |
| TOR signaling | 0.004560901 | GO:0031929 |
| PI3K-Akt signaling pathway | 0.004962045 | KEGG pathway |
| TORC1 complex | 0.009121801 | GO:0031931 |
| viral envelope | 0.010638328 | GO:0019031 |
| Ubiquitin_Proteasome_system, E3: HECT | 0.013640786 | ubs family |
| protein polyubiquitination | 0.020619336 | GO:0000209 |
| protein peptidyl-prolyl isomerization | 0.020619336 | GO:0000413 |
| chaperone-mediated protein folding | 0.020619336 | GO:0061077 |
| Ubiquitin mediated proteolysis | 0.028625431 | KEGG pathway |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 0.028747764 | GO:0043161 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002809 | AT2G26570 (0) | WEB1|WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 |
| CRO_T005477 | AT5G21990 (2.00E-27) | OEP61|outer envelope protein 61; TPR7|tetratricopeptide repeat 7 |
| CRO_T009800 | - | - |
| CRO_T011109 | AT3G08850 (7.00E-15) | ATRAPTOR1B; RAPTOR1; RAPTOR1B|HEAT repeat ; WD domain, G-beta repeat protein protein |
| CRO_T012612 | AT4G40045 (1.00E-11) | unknown protein |
| CRO_T023971 | AT1G58060 (0) | RNA helicase family protein |
| CRO_T032857 | AT1G55860 (2.00E-35) | UPL1|ubiquitin-protein ligase 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000242 | protein methylation mitochondrial small ribosomal subunit protein methyltransferase activity | details |
| TreatCFM000345 | DNA-directed RNA polymerase activity Purine metabolism protein methyltransferase activity protein methylation Transcription_related, Transcription factor: HB | details |
| TreatCFM000758 | response to aluminum ion response to acidic pH regulation of apoptotic process negative regulation of mRNA splicing, via spliceosome ATP metabolic process 4-aminobutanoate degradation I 4-aminobutanoate degradation IV proton-transporting V-type ATPase, V1 domain benzoate biosynthesis III (CoA-dependent, non-β-oxidative) fatty acid α-oxidation I fatty acid elongation -- saturated L-glutamate degradation IV cellular component organization chaperone-mediated protein folding phosphatidylinositol phosphorylation | details |
| TreatCFM000826 | mRNA surveillance pathway Biotin metabolism Renin-angiotensin system Ubiquitin_Proteasome_system, E3: HECT biotin synthase activity serine-type exopeptidase activity | details |
| TreatCFM000963 | intracellular protein transport phosphatidylethanolamine biosynthesis I 1-phosphatidylinositol 4-kinase activity protein methyltransferase activity voltage-gated chloride channel activity protein methylation chloride transport phosphatidylinositol-mediated signaling 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis Ran GTPase binding regulation of anion transmembrane transport phosphatidylinositol phosphorylation unidimensional cell growth ion transmembrane transport Inositol phosphate metabolism Lysosome clathrin adaptor complex protein transporter activity vesicle-mediated transport RNA transport integral component of membrane | details |
| TreatCFM001360 | proteasome-mediated ubiquitin-dependent protein catabolic process protein polyubiquitination protein ubiquitination involved in ubiquitin-dependent protein catabolic process TOR signaling ubiquitin protein ligase activity Ubiquitin_Proteasome_system, E3: RING PI3K-Akt signaling pathway TORC1 complex viral envelope chaperone-mediated protein folding protein peptidyl-prolyl isomerization FK506 binding zinc ion binding integral component of membrane peptidyl-prolyl cis-trans isomerase activity heterocyclic compound binding organic cyclic compound binding | details |
| TreatCFM002001 | chaperone-mediated protein folding cytoplasmic translation FK506 binding peptidyl-prolyl cis-trans isomerase activity | details |
Expression profiles
 Show details about module gene expression profiling |