TreatCFM000826's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| mRNA surveillance pathway | 0.005452833 | KEGG pathway |
| Biotin metabolism | 0.011680365 | KEGG pathway |
| Renin-angiotensin system | 0.011680365 | KEGG pathway |
| Ubiquitin_Proteasome_system, E3: HECT | 0.025303719 | ubs family |
| biotin synthase activity | 0.041535233 | GO:0004076 |
| serine-type exopeptidase activity | 0.041535233 | GO:0070008 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001072 | AT2G43360 (6.00E-41) | BIO2|BIOTIN AUXOTROPH 2; BIOB|BIOTIN AUXOTROPH B |
| CRO_T003406 | AT1G13460 (2.00E-164) | Protein phosphatase 2A regulatory B subunit family protein |
| CRO_T004688 | AT5G26240 (1.00E-74) | CLC-D|chloride channel D |
| CRO_T010351 | AT2G45320 (1.00E-139) | unknown protein |
| CRO_T012612 | AT4G40045 (1.00E-11) | unknown protein |
| CRO_T013360 | AT3G16010 (8.00E-42) | Pentatricopeptide repeat (PPR-like) superfamily protein |
| CRO_T022368 | AT1G54450 (1.00E-89) | Calcium-binding EF-hand family protein |
| CRO_T022509 | - | - |
| CRO_T023579 | AT5G41100 (7.00E-38) | unknown protein |
| CRO_T024612 | AT3G21640 (7.00E-15) | FKBP42|FK506-BINDING PROTEIN 42; TWD1|TWISTED DWARF 1; UCU2|ULTRACURVATA 2 |
| CRO_T028523 | AT3G17205 (3.00E-78) | UPL6|ubiquitin protein ligase 6 |
| CRO_T029433 | AT4G16720 (5.00E-91) | Ribosomal protein L23/L15e family protein |
| CRO_T033531 | AT1G50380 (1.00E-42) | Prolyl oligopeptidase family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000242 | protein methylation mitochondrial small ribosomal subunit protein methyltransferase activity | details |
| TreatCFM000345 | DNA-directed RNA polymerase activity Purine metabolism protein methyltransferase activity protein methylation Transcription_related, Transcription factor: HB | details |
| TreatCFM000758 | response to aluminum ion response to acidic pH regulation of apoptotic process negative regulation of mRNA splicing, via spliceosome ATP metabolic process 4-aminobutanoate degradation I 4-aminobutanoate degradation IV proton-transporting V-type ATPase, V1 domain benzoate biosynthesis III (CoA-dependent, non-β-oxidative) fatty acid α-oxidation I fatty acid elongation -- saturated L-glutamate degradation IV cellular component organization chaperone-mediated protein folding phosphatidylinositol phosphorylation | details |
| TreatCFM000963 | intracellular protein transport phosphatidylethanolamine biosynthesis I 1-phosphatidylinositol 4-kinase activity protein methyltransferase activity voltage-gated chloride channel activity protein methylation chloride transport phosphatidylinositol-mediated signaling 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis Ran GTPase binding regulation of anion transmembrane transport phosphatidylinositol phosphorylation unidimensional cell growth ion transmembrane transport Inositol phosphate metabolism Lysosome clathrin adaptor complex protein transporter activity vesicle-mediated transport RNA transport integral component of membrane | details |
| TreatCFM001237 | protein ubiquitination involved in ubiquitin-dependent protein catabolic process TOR signaling PI3K-Akt signaling pathway TORC1 complex viral envelope Ubiquitin_Proteasome_system, E3: HECT protein polyubiquitination protein peptidyl-prolyl isomerization chaperone-mediated protein folding Ubiquitin mediated proteolysis proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM001452 | UDP-N-acetyl-D-glucosamine biosynthesis II mRNA guanylyltransferase activity glutamine-fructose-6-phosphate transaminase (isomerizing) activity polynucleotide 5'-phosphatase activity serine-type endopeptidase activity serine-type exopeptidase activity 7-methylguanosine mRNA capping UDP-N-acetylglucosamine metabolic process carbohydrate derivative biosynthetic process polynucleotide 5' dephosphorylation proteolysis DNA ligation voltage-gated chloride channel activity protein tyrosine/serine/threonine phosphatase activity DNA ligase (ATP) activity Renin-angiotensin system chloride transport fructose 6-phosphate metabolic process cellular macromolecule biosynthetic process regulation of anion transmembrane transport Cell cycle - Caulobacter peptidyl-tyrosine dephosphorylation protein tyrosine phosphatase activity DNA recombination unidimensional cell growth DNA metabolic process ion transmembrane transport nucleotidyltransferase activity Amino sugar and nucleotide sugar metabolism mRNA surveillance pathway DNA repair | details |
| TreatCFM001851 | nectar secretion sucrose biosynthetic process protein kinase C-activating G-protein coupled receptor signaling pathway plasmodesma phosphatidate metabolism, as a signaling molecule sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II sucrose-phosphate synthase activity diacylglycerol kinase activity DNA topological change sucrose synthase activity thiol-dependent ubiquitinyl hydrolase activity FoxO signaling pathway protein deubiquitination cytoplasmic translation double-stranded DNA binding Glycerolipid metabolism ubiquitin-dependent protein catabolic process intracellular signal transduction | details |
| TreatCFM001920 | response to aluminum ion response to acidic pH chaperone-mediated protein folding Transcription_related, Transcription factor: C2H2 mRNA surveillance pathway RNA transport | details |
| TreatCFM002001 | chaperone-mediated protein folding cytoplasmic translation FK506 binding peptidyl-prolyl cis-trans isomerase activity | details |
Expression profiles
 Show details about module gene expression profiling |