TreatCFM000758's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| response to aluminum ion | 0.01667307 | GO:0010044 |
| response to acidic pH | 0.01667307 | GO:0010447 |
| regulation of apoptotic process | 0.01667307 | GO:0042981 |
| negative regulation of mRNA splicing, via spliceosome | 0.01667307 | GO:0048025 |
| ATP metabolic process | 0.019998229 | GO:0046034 |
| 4-aminobutanoate degradation I | 0.02555843 | plantCyc |
| 4-aminobutanoate degradation IV | 0.02555843 | plantCyc |
| proton-transporting V-type ATPase, V1 domain | 0.027335947 | GO:0033180 |
| benzoate biosynthesis III (CoA-dependent, non-β-oxidative) | 0.027629476 | plantCyc |
| fatty acid α-oxidation I | 0.027629476 | plantCyc |
| fatty acid elongation -- saturated | 0.027629476 | plantCyc |
| L-glutamate degradation IV | 0.027629476 | plantCyc |
| cellular component organization | 0.030516772 | GO:0016043 |
| chaperone-mediated protein folding | 0.049783452 | GO:0061077 |
| phosphatidylinositol phosphorylation | 0.049783452 | GO:0046854 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001058 | AT3G14270 (0) | FAB1B|FORMS APLOID AND BINUCLEATE CELLS 1B |
| CRO_T002632 | - | - |
| CRO_T002809 | AT2G26570 (0) | WEB1|WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 |
| CRO_T005840 | AT1G80600 (3.00E-22) | TUP5|TUMOR PRONE 5; WIN1|HOPW1-1-interacting 1 |
| CRO_T006323 | AT3G62900 (1.00E-61) | CW-type Zinc Finger |
| CRO_T007074 | AT1G54100 (0) | ALDH7B4|aldehyde dehydrogenase 7B4 |
| CRO_T010798 | AT3G15790 (1.00E-24) | MBD11|methyl-CPG-binding domain 11 |
| CRO_T013978 | AT1G03080 (1.00E-64) | NET1D|Networked 1D |
| CRO_T015017 | AT1G11100 (0) | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related |
| CRO_T015680 | AT1G45207 (2.00E-33) | Remorin family protein |
| CRO_T022238 | AT3G16830 (0) | TPR2|TOPLESS-related 2 |
| CRO_T024156 | AT1G34370 (8.00E-105) | STOP1|sensitive to proton rhizotoxicity 1 |
| CRO_T024612 | AT3G21640 (7.00E-15) | FKBP42|FK506-BINDING PROTEIN 42; TWD1|TWISTED DWARF 1; UCU2|ULTRACURVATA 2 |
| CRO_T024616 | AT1G20260 (0) | VAB3|V-ATPase B subunit 3 |
| CRO_T026211 | AT5G15270 (0.000000002) | RNA-binding KH domain-containing protein |
| CRO_T028087 | AT1G49760 (0) | PAB8|poly(A) binding protein 8 |
| CRO_T030136 | AT2G05990 (1.00E-152) | ENR1|ENOYL-ACP REDUCTASE 1; MOD1|MOSAIC DEATH 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000339 | DNA ligation protein initiator methionine removal polynucleotide 5' dephosphorylation 7-methylguanosine mRNA capping polynucleotide 5'-phosphatase activity mRNA guanylyltransferase activity metalloaminopeptidase activity 1-phosphatidylinositol 4-kinase activity protein tyrosine/serine/threonine phosphatase activity DNA ligase (ATP) activity mRNA surveillance pathway 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis homogalacturonan degradation hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 Transcription_related, Transcription factor: NAC protein tyrosine phosphatase activity cytosolic ribosome phosphatidylinositol phosphorylation DNA recombination peptidyl-tyrosine dephosphorylation protein peptidyl-prolyl isomerization | details |
| TreatCFM000628 | transcription elongation from RNA polymerase II promoter Transcription_related, Transcription regulator: IWS1 elongin complex fatty acid elongation -- saturated nucleosome stearate biosynthesis II (bacteria and plants) palmitate biosynthesis II (bacteria and plants) Fatty acid metabolism mRNA surveillance pathway Necroptosis | details |
| TreatCFM000826 | mRNA surveillance pathway Biotin metabolism Renin-angiotensin system Ubiquitin_Proteasome_system, E3: HECT biotin synthase activity serine-type exopeptidase activity | details |
| TreatCFM001237 | protein ubiquitination involved in ubiquitin-dependent protein catabolic process TOR signaling PI3K-Akt signaling pathway TORC1 complex viral envelope Ubiquitin_Proteasome_system, E3: HECT protein polyubiquitination protein peptidyl-prolyl isomerization chaperone-mediated protein folding Ubiquitin mediated proteolysis proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM001370 | gluconeogenesis I lipid binding Transcription_related, Transcription factor: NF-YA D-myo-inositol (1,4,5)-trisphosphate degradation flavin biosynthesis I (bacteria and plants) GTP cyclohydrolase II activity 3,4-dihydroxy-2-butanone-4-phosphate synthase activity Riboflavin metabolism malate dehydrogenase (decarboxylating) (NAD+) activity malate metabolic process riboflavin biosynthetic process phosphatidylinositol dephosphorylation microtubule cytoskeleton cytoskeletal part | details |
| TreatCFM001415 | cytosol inosine biosynthetic process hypoxanthine salvage adenosine catabolic process 4-aminobutanoate degradation I 4-aminobutanoate degradation IV exocyst assembly exocyst localization Autophagy - animal Butanoate metabolism nucleophagy autophagosome assembly adenosine deaminase activity 1-phosphatidylinositol 4-kinase activity L-glutamate degradation IV D-myo-inositol (1,4,5)-trisphosphate biosynthesis 3-phosphoinositide biosynthesis phosphatidylinositol phosphorylation transaminase activity exocyst protein autophosphorylation response to salt stress identical protein binding | details |
| TreatCFM001609 | mRNA guanylyltransferase activity polynucleotide 5'-phosphatase activity 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity arylformamidase activity tryptophan catabolic process to kynurenine DNA ligation polynucleotide 5' dephosphorylation 7-methylguanosine mRNA capping phospholipid-translocating ATPase activity protein tyrosine/serine/threonine phosphatase activity DNA ligase (ATP) activity phospholipid translocation peptidyl-tyrosine dephosphorylation protein tyrosine phosphatase activity mRNA surveillance pathway DNA recombination gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt DNA repair | details |
| TreatCFM001920 | response to aluminum ion response to acidic pH chaperone-mediated protein folding Transcription_related, Transcription factor: C2H2 mRNA surveillance pathway RNA transport | details |
| TreatCFM002001 | chaperone-mediated protein folding cytoplasmic translation FK506 binding peptidyl-prolyl cis-trans isomerase activity | details |
| TreatCFM002005 | Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family intracellular distribution of mitochondria translational initiation | details |
Expression profiles
 Show details about module gene expression profiling |