TreatCFM001244's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| organic cyclic compound metabolic process | 0.001542161 | GO:1901360 |
| long-chain fatty acid biosynthetic process | 0.001542161 | GO:0042759 |
| small molecule metabolic process | 0.001542161 | GO:0044281 |
| response to molecule of fungal origin | 0.001542161 | GO:0002238 |
| phosphatidylserine biosynthetic process | 0.001542161 | GO:0006659 |
| phosphatidylethanolamine biosynthesis I | 0.002924883 | plantCyc |
| superpathway of phospholipid biosynthesis II (plants) | 0.002924883 | plantCyc |
| heterocycle metabolic process | 0.003212122 | GO:0046483 |
| sphingosine N-acyltransferase activity | 0.004048164 | GO:0050291 |
| tocopherol cyclase activity | 0.004048164 | GO:0009976 |
| vitamin E biosynthesis (tocopherols) | 0.004871565 | plantCyc |
| cellular lipid metabolic process | 0.004954381 | GO:0044255 |
| Ubiquitin_Proteasome_system, E3: U-box | 0.019000978 | ubs family |
| MAPK signaling pathway | 0.02579591 | KEGG pathway |
| Ubiquinone and other terpenoid-quinone biosynthesis | 0.02579591 | KEGG pathway |
| Glycerophospholipid metabolism | 0.027472983 | KEGG pathway |
| chloroplast part | 0.049462765 | GO:0044434 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008761 | AT4G32770 (3.00E-169) | ATSDX1|SUCROSE EXPORT DEFECTIVE 1; VTE1|VITAMIN E DEFICIENT 1 |
| CRO_T017850 | AT5G55990 (4.00E-113) | CBL2|calcineurin B-like protein 2 |
| CRO_T020543 | AT2G42810 (1.00E-12) | AtPP5|protein phosphatase 5; PAPP5|Phytochrome-Associated Protein Phosphatase 5; PP5.2|protein phosphatase 5.2 |
| CRO_T026615 | AT3G19260 (3.00E-106) | LAG1 HOMOLOG 2|LONGEVITY ASSURANCE GENE1 HOMOLOG 2; LOH2|LAG1 homologue 2 |
| CRO_T028280 | AT5G41070 (0.0001) | DRB5|dsRNA-binding protein 5 |
| CRO_T030724 | AT1G15110 (0) | PSS1|phosphatidylserine synthase 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001117 | phosphatidylethanolamine biosynthesis I superpathway of phospholipid biosynthesis II (plants) long-chain fatty acid biosynthetic process response to molecule of fungal origin phosphatidylserine biosynthetic process tRNA threonylcarbamoyladenosine modification EKC/KEOPS complex AP-3 adaptor complex cytoplasmic microtubule organization sphingosine N-acyltransferase activity Ubiquitin_Proteasome_system, E3: U-box Glycerophospholipid metabolism Lysosome microtubule-severing ATPase activity | details |
| TreatCFM001640 | trans-Golgi network outer membrane-bounded periplasmic space Calcium signaling pathway MAPK signaling pathway early endosome manganese ion homeostasis manganese-transporting ATPase activity manganese ion transmembrane transport cell plate assembly cytochrome complex assembly calcium ion transmembrane transport ATP binding calcium-transporting ATPase activity RNA secondary structure unwinding root development translational initiation | details |
| TreatCFM001733 | CTP:2-trans,-6-trans-farnesol kinase activity geranylgeraniol kinase activity geraniol kinase activity tocopherol cyclase activity farnesylcysteine salvage pathway vitamin E biosynthesis (tocopherols) small molecule metabolic process organic cyclic compound metabolic process farnesol metabolic process heterocycle metabolic process carpel development cellular lipid metabolic process magnesium ion transmembrane transport magnesium ion transport magnesium ion transmembrane transporter activity iron-sulfur cluster assembly MAPK signaling pathway Terpenoid backbone biosynthesis Ubiquinone and other terpenoid-quinone biosynthesis nucleotidyltransferase activity response to abscisic acid chloroplast part | details |
| TreatCFM001848 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc cytoplasmic microtubule organization Galactose metabolism Ubiquitin_Proteasome_system, E3: U-box | details |
| TreatCFM001895 | vitamin E biosynthesis (tocopherols) tocopherol cyclase activity small molecule metabolic process organic cyclic compound metabolic process heterocycle metabolic process resolution of recombination intermediates Smc5-Smc6 complex vacuolar proton-transporting V-type ATPase, V1 domain plant-type vacuole cellular lipid metabolic process chromosome organization double-strand break repair via homologous recombination MAPK signaling pathway Ubiquinone and other terpenoid-quinone biosynthesis chloroplast part iron-sulfur cluster assembly unidimensional cell growth response to heat ATP hydrolysis coupled proton transport hydrogen ion transmembrane transporter activity heat shock protein binding mitochondrial matrix | details |
| TreatCFM001936 | geranylgeraniol kinase activity CTP:2-trans,-6-trans-farnesol kinase activity geraniol kinase activity postreplication repair carpel development protein K63-linked ubiquitination farnesol metabolic process tRNA pseudouridine synthesis farnesylcysteine salvage pathway Ubiquitin_Proteasome_system, E2: UBC Nucleotide excision repair Toll and Imd signaling pathway adenosine ribonucleotides de novo biosynthesis MAPK signaling pathway deaminase activity ABC transporters Terpenoid backbone biosynthesis pseudouridine synthase activity | details |
| TreatCFM001975 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Glycosaminoglycan degradation geraniol kinase activity organic cyclic compound metabolic process long-chain fatty acid biosynthetic process CTP:2-trans,-6-trans-farnesol kinase activity response to molecule of fungal origin geranylgeraniol kinase activity small molecule metabolic process tocopherol cyclase activity farnesol metabolic process adenyl-nucleotide exchange factor activity sphingosine N-acyltransferase activity heterocycle metabolic process carpel development cellular lipid metabolic process Sphingolipid metabolism ceramide degradation farnesylcysteine salvage pathway vitamin E biosynthesis (tocopherols) chaperone binding Ubiquinone and other terpenoid-quinone biosynthesis Terpenoid backbone biosynthesis gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt isomerase activity nucleotidyltransferase activity regulation of catalytic activity | details |
| TreatCFM002055 | cellulose biosynthesis xyloglucan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc organic cyclic compound metabolic process small molecule metabolic process heterocycle metabolic process queuosine biosynthetic process vitamin E biosynthesis (tocopherols) Ubiquinone and other terpenoid-quinone biosynthesis cellular lipid metabolic process tocopherol cyclase activity queuine tRNA-ribosyltransferase activity response to heat heat shock protein binding Transcription_related, Transcription factor: bHLH cell redox homeostasis | details |
Expression profiles
 Show details about module gene expression profiling |