TreatCFM001733's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| CTP:2-trans,-6-trans-farnesol kinase activity | 0.002257322 | GO:0052669 |
| geranylgeraniol kinase activity | 0.002257322 | GO:0052671 |
| geraniol kinase activity | 0.002257322 | GO:0052670 |
| tocopherol cyclase activity | 0.002257322 | GO:0009976 |
| farnesylcysteine salvage pathway | 0.003985826 | plantCyc |
| vitamin E biosynthesis (tocopherols) | 0.003985826 | plantCyc |
| small molecule metabolic process | 0.005889832 | GO:0044281 |
| organic cyclic compound metabolic process | 0.005889832 | GO:1901360 |
| farnesol metabolic process | 0.005889832 | GO:0016487 |
| heterocycle metabolic process | 0.007361202 | GO:0046483 |
| carpel development | 0.008243327 | GO:0048440 |
| cellular lipid metabolic process | 0.008830831 | GO:0044255 |
| magnesium ion transmembrane transport | 0.012502952 | GO:1903830 |
| magnesium ion transport | 0.012502952 | GO:0015693 |
| magnesium ion transmembrane transporter activity | 0.014431926 | GO:0015095 |
| iron-sulfur cluster assembly | 0.015681866 | GO:0016226 |
| MAPK signaling pathway | 0.01684199 | KEGG pathway |
| Terpenoid backbone biosynthesis | 0.01684199 | KEGG pathway |
| Ubiquinone and other terpenoid-quinone biosynthesis | 0.01684199 | KEGG pathway |
| nucleotidyltransferase activity | 0.025522569 | GO:0016779 |
| response to abscisic acid | 0.038692375 | GO:0009737 |
| chloroplast part | 0.049462765 | GO:0044434 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008761 | AT4G32770 (3.00E-169) | ATSDX1|SUCROSE EXPORT DEFECTIVE 1; VTE1|VITAMIN E DEFICIENT 1 |
| CRO_T010291 | AT5G58560 (1.00E-82) | FOLK|farnesol kinase |
| CRO_T013598 | AT3G23700 (4.00E-24) | Nucleic acid-binding proteins superfamily |
| CRO_T017850 | AT5G55990 (4.00E-113) | CBL2|calcineurin B-like protein 2 |
| CRO_T020880 | AT1G71900 (5.00E-83) | Protein of unknown function (DUF803) |
| CRO_T030366 | AT4G12130 (4.00E-136) | Glycine cleavage T-protein family |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000515 | chloroplast accumulation movement microtubule-based movement microtubule motor activity microtubule binding geranylgeraniol kinase activity geraniol kinase activity CTP:2-trans,-6-trans-farnesol kinase activity farnesol metabolic process peptidyl-proline hydroxylation phosphatidylglycerol biosynthetic process carpel development protein K63-linked ubiquitination postreplication repair long-chain fatty acid metabolic process Ubiquitin_Proteasome_system, E2: UBC Toll and Imd signaling pathway glycerol-3-phosphate O-acyltransferase activity procollagen-proline 4-dioxygenase activity long-chain fatty acid-CoA ligase activity Arginine and proline metabolism Fatty acid metabolism Glycerolipid metabolism Terpenoid backbone biosynthesis L-ascorbic acid binding | details |
| TreatCFM001244 | organic cyclic compound metabolic process long-chain fatty acid biosynthetic process small molecule metabolic process response to molecule of fungal origin phosphatidylserine biosynthetic process phosphatidylethanolamine biosynthesis I superpathway of phospholipid biosynthesis II (plants) heterocycle metabolic process sphingosine N-acyltransferase activity tocopherol cyclase activity vitamin E biosynthesis (tocopherols) cellular lipid metabolic process Ubiquitin_Proteasome_system, E3: U-box MAPK signaling pathway Ubiquinone and other terpenoid-quinone biosynthesis Glycerophospholipid metabolism chloroplast part | details |
| TreatCFM001479 | magnesium ion transmembrane transport magnesium ion transport magnesium ion transmembrane transporter activity regulation of actin filament polymerization response to very low light intensity stimulus alanyl-tRNA aminoacylation Ser-tRNA(Ala) hydrolase activity alanine-tRNA ligase activity regulation of translational fidelity tRNA binding vegetative to reproductive phase transition of meristem actin cytoskeleton integral component of membrane viral nucleocapsid intracellular ribonucleoprotein complex Endocytosis | details |
| TreatCFM001640 | trans-Golgi network outer membrane-bounded periplasmic space Calcium signaling pathway MAPK signaling pathway early endosome manganese ion homeostasis manganese-transporting ATPase activity manganese ion transmembrane transport cell plate assembly cytochrome complex assembly calcium ion transmembrane transport ATP binding calcium-transporting ATPase activity RNA secondary structure unwinding root development translational initiation | details |
| TreatCFM001895 | vitamin E biosynthesis (tocopherols) tocopherol cyclase activity small molecule metabolic process organic cyclic compound metabolic process heterocycle metabolic process resolution of recombination intermediates Smc5-Smc6 complex vacuolar proton-transporting V-type ATPase, V1 domain plant-type vacuole cellular lipid metabolic process chromosome organization double-strand break repair via homologous recombination MAPK signaling pathway Ubiquinone and other terpenoid-quinone biosynthesis chloroplast part iron-sulfur cluster assembly unidimensional cell growth response to heat ATP hydrolysis coupled proton transport hydrogen ion transmembrane transporter activity heat shock protein binding mitochondrial matrix | details |
| TreatCFM001936 | geranylgeraniol kinase activity CTP:2-trans,-6-trans-farnesol kinase activity geraniol kinase activity postreplication repair carpel development protein K63-linked ubiquitination farnesol metabolic process tRNA pseudouridine synthesis farnesylcysteine salvage pathway Ubiquitin_Proteasome_system, E2: UBC Nucleotide excision repair Toll and Imd signaling pathway adenosine ribonucleotides de novo biosynthesis MAPK signaling pathway deaminase activity ABC transporters Terpenoid backbone biosynthesis pseudouridine synthase activity | details |
| TreatCFM001975 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Glycosaminoglycan degradation geraniol kinase activity organic cyclic compound metabolic process long-chain fatty acid biosynthetic process CTP:2-trans,-6-trans-farnesol kinase activity response to molecule of fungal origin geranylgeraniol kinase activity small molecule metabolic process tocopherol cyclase activity farnesol metabolic process adenyl-nucleotide exchange factor activity sphingosine N-acyltransferase activity heterocycle metabolic process carpel development cellular lipid metabolic process Sphingolipid metabolism ceramide degradation farnesylcysteine salvage pathway vitamin E biosynthesis (tocopherols) chaperone binding Ubiquinone and other terpenoid-quinone biosynthesis Terpenoid backbone biosynthesis gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt isomerase activity nucleotidyltransferase activity regulation of catalytic activity | details |
| TreatCFM002055 | cellulose biosynthesis xyloglucan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc organic cyclic compound metabolic process small molecule metabolic process heterocycle metabolic process queuosine biosynthetic process vitamin E biosynthesis (tocopherols) Ubiquinone and other terpenoid-quinone biosynthesis cellular lipid metabolic process tocopherol cyclase activity queuine tRNA-ribosyltransferase activity response to heat heat shock protein binding Transcription_related, Transcription factor: bHLH cell redox homeostasis | details |
| TreatCFM002139 | geranylgeraniol kinase activity geraniol kinase activity CTP:2-trans,-6-trans-farnesol kinase activity soluble NSF attachment protein activity farnesylcysteine salvage pathway SNARE complex disassembly farnesol metabolic process protein import syntaxin binding protein targeting membrane fusion carpel development adenosine ribonucleotides de novo biosynthesis Transcription_related, Transcription factor: FAR1 ABC transporters Autophagy - yeast Protein export Terpenoid backbone biosynthesis ATP binding nucleotidyltransferase activity amino acid binding | details |
Expression profiles
 Show details about module gene expression profiling |