TreatCFM001353's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| protein import into nucleus, docking | 0.004873365 | GO:0000059 |
| nuclear pore organization | 0.004873365 | GO:0006999 |
| intracellular organelle part | 0.00541445 | GO:0044446 |
| nuclear pore inner ring | 0.00541445 | GO:0044611 |
| protein complex | 0.00541445 | GO:0043234 |
| Transcription_related, Transcription factor: E2F-DP | 0.005847174 | TF family |
| Transcription_related, Transcription factor: NF-YB | 0.005847174 | TF family |
| Antigen processing and presentation | 0.010609255 | KEGG pathway |
| Cell cycle | 0.010609255 | KEGG pathway |
| structural constituent of nuclear pore | 0.011694348 | GO:0017056 |
| protein heterodimerization activity | 0.031065353 | GO:0046982 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006181 | AT2G13570 (2.00E-45) | NF-YB7|nuclear factor Y, subunit B7 |
| CRO_T009635 | AT2G42320 (0) | nucleolar protein gar2-related |
| CRO_T024701 | AT1G49910 (3.00E-50) | BUB3.2|BUB (BUDDING UNINHIBITED BY BENZYMIDAZOL) 3.2 |
| CRO_T024871 | AT3G56870 (1.00E-35) | unknown protein |
| CRO_T025322 | AT3G10220 (6.00E-107) | EMB2804|EMBRYO DEFECTIVE 2804 |
| CRO_T028016 | AT5G22220 (6.00E-11) | E2F1|E2F transcription factor 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000735 | Antigen processing and presentation Transcription_related, Transcription factor: NF-YB asparagine biosynthetic process glutamine metabolic process asparagine synthase (glutamine-hydrolyzing) activity | details |
| TreatCFM001784 | nuclear pore inner ring structural constituent of nuclear pore RNA binding cytoplasmic mRNA processing body assembly deadenylation-dependent decapping of nuclear-transcribed mRNA production of small RNA involved in gene silencing by RNA nuclear pore organization posttranscriptional gene silencing by RNA Transcription_related, Transcription factor: E2F-DP protein import into nucleus, docking cytoplasmic mRNA processing body RNA degradation mRNA processing Transcription_related, Transcription factor: B3 | details |
| TreatCFM001818 | RNA degradation porin activity AU-rich element binding voltage-gated cation channel activity integral component of chloroplast outer membrane etioplast membrane pore complex Cellular senescence exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay deadenylation-dependent decapping of nuclear-transcribed mRNA U1 snRNA 3'-end processing U5 snRNA 3'-end processing regulation of ion transmembrane transport exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) nuclear polyadenylation-dependent tRNA catabolic process cytoplasmic mRNA processing body assembly nuclear polyadenylation-dependent mRNA catabolic process nuclear polyadenylation-dependent rRNA catabolic process nuclear mRNA surveillance U4 snRNA 3'-end processing nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' cytoplasmic exosome (RNase complex) nuclear exosome (RNase complex) Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase cellular macromolecule biosynthetic process cytoplasmic mRNA processing body DNA metabolic process Transcription_related, Transcription factor: B3 | details |
| TreatCFM001972 | formation of glycosidic bonds, GlycosylTransferases: GTnc deadenylation-dependent decapping of nuclear-transcribed mRNA cytoplasmic mRNA processing body assembly Other types of O-glycan biosynthesis RNA degradation cytoplasmic mRNA processing body cell wall organization | details |
Expression profiles
 Show details about module gene expression profiling |