TreatCFM001972's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.002480143 | cazy family |
| deadenylation-dependent decapping of nuclear-transcribed mRNA | 0.003412011 | GO:0000290 |
| cytoplasmic mRNA processing body assembly | 0.003412011 | GO:0033962 |
| Other types of O-glycan biosynthesis | 0.005581806 | KEGG pathway |
| RNA degradation | 0.022815599 | KEGG pathway |
| cytoplasmic mRNA processing body | 0.036139902 | GO:0000932 |
| cell wall organization | 0.044293454 | GO:0071555 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002553 | AT1G79090 (0) | unknown protein |
| CRO_T006930 | AT3G50950 (9.00E-15) | ZAR1|HOPZ-ACTIVATED RESISTANCE 1 |
| CRO_T006932 | AT5G35450 (6.00E-30) | Disease resistance protein (CC-NBS-LRR class) family |
| CRO_T008149 | AT1G19360 (9.00E-175) | RRA3|reduced residual arabinose 3 |
| CRO_T010855 | AT1G34050 (4.00E-21) | Ankyrin repeat family protein |
| CRO_T025322 | AT3G10220 (6.00E-107) | EMB2804|EMBRYO DEFECTIVE 2804 |
| CRO_T027861 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000735 | Antigen processing and presentation Transcription_related, Transcription factor: NF-YB asparagine biosynthetic process glutamine metabolic process asparagine synthase (glutamine-hydrolyzing) activity | details |
| TreatCFM001140 | Cytochrome_P450, Cytochrome P450: CYP90A brassinosteroid biosynthesis I brassinosteroid biosynthesis II formation of glycosidic bonds, GlycosylTransferases: GTnc Brassinosteroid biosynthesis Circadian rhythm - plant Other types of O-glycan biosynthesis Transcription_related, Transcription factor: Orphans red or far-red light signaling pathway positive regulation of flower development pollen exine formation anther wall tapetum cell differentiation Circadian rhythm response to UV-B negative regulation of transcription, DNA-templated sterol metabolic process brassinosteroid homeostasis phosphorelay signal transduction system brassinosteroid biosynthetic process | details |
| TreatCFM001353 | protein import into nucleus, docking nuclear pore organization intracellular organelle part nuclear pore inner ring protein complex Transcription_related, Transcription factor: E2F-DP Transcription_related, Transcription factor: NF-YB Antigen processing and presentation Cell cycle structural constituent of nuclear pore protein heterodimerization activity | details |
| TreatCFM001414 | protoheme IX ABC transporter activity heme-transporting ATPase activity intracellular outer membrane-bounded periplasmic space coenzyme A transmembrane transporter activity coenzyme A transmembrane transport cytoplasmic mRNA processing body assembly deadenylation-dependent decapping of nuclear-transcribed mRNA RNA degradation heme transport cytochrome complex assembly cytoplasmic mRNA processing body tRNA modification protein peptidyl-prolyl isomerization integral component of membrane peptidyl-prolyl cis-trans isomerase activity mitochondrial inner membrane trans-Golgi network endosome | details |
| TreatCFM001784 | nuclear pore inner ring structural constituent of nuclear pore RNA binding cytoplasmic mRNA processing body assembly deadenylation-dependent decapping of nuclear-transcribed mRNA production of small RNA involved in gene silencing by RNA nuclear pore organization posttranscriptional gene silencing by RNA Transcription_related, Transcription factor: E2F-DP protein import into nucleus, docking cytoplasmic mRNA processing body RNA degradation mRNA processing Transcription_related, Transcription factor: B3 | details |
| TreatCFM001818 | RNA degradation porin activity AU-rich element binding voltage-gated cation channel activity integral component of chloroplast outer membrane etioplast membrane pore complex Cellular senescence exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay deadenylation-dependent decapping of nuclear-transcribed mRNA U1 snRNA 3'-end processing U5 snRNA 3'-end processing regulation of ion transmembrane transport exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) nuclear polyadenylation-dependent tRNA catabolic process cytoplasmic mRNA processing body assembly nuclear polyadenylation-dependent mRNA catabolic process nuclear polyadenylation-dependent rRNA catabolic process nuclear mRNA surveillance U4 snRNA 3'-end processing nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' cytoplasmic exosome (RNase complex) nuclear exosome (RNase complex) Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase cellular macromolecule biosynthetic process cytoplasmic mRNA processing body DNA metabolic process Transcription_related, Transcription factor: B3 | details |
| TreatCFM001973 | formation of glycosidic bonds, GlycosylTransferases: GTnc reactive oxygen species degradation superoxide radicals degradation Other types of O-glycan biosynthesis deadenylation-dependent decapping of nuclear-transcribed mRNA cytoplasmic mRNA processing body assembly catalase activity response to hydrogen peroxide RNA degradation hydrogen peroxide catabolic process cytoplasmic mRNA processing body Golgi membrane Peroxisome | details |
Expression profiles
 Show details about module gene expression profiling |