TreatCFM001784's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| nuclear pore inner ring | 0.005687189 | GO:0044611 |
| structural constituent of nuclear pore | 0.006820393 | GO:0017056 |
| RNA binding | 0.006820393 | GO:0003723 |
| cytoplasmic mRNA processing body assembly | 0.007370324 | GO:0033962 |
| deadenylation-dependent decapping of nuclear-transcribed mRNA | 0.007370324 | GO:0000290 |
| production of small RNA involved in gene silencing by RNA | 0.007370324 | GO:0070918 |
| nuclear pore organization | 0.007370324 | GO:0006999 |
| posttranscriptional gene silencing by RNA | 0.007370324 | GO:0035194 |
| Transcription_related, Transcription factor: E2F-DP | 0.007960653 | TF family |
| protein import into nucleus, docking | 0.008771862 | GO:0000059 |
| cytoplasmic mRNA processing body | 0.011926168 | GO:0000932 |
| RNA degradation | 0.015210399 | KEGG pathway |
| mRNA processing | 0.015773961 | GO:0006397 |
| Transcription_related, Transcription factor: B3 | 0.028886633 | TF family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002553 | AT1G79090 (0) | unknown protein |
| CRO_T009635 | AT2G42320 (0) | nucleolar protein gar2-related |
| CRO_T016298 | AT5G23080 (2.00E-122) | TGH|TOUGH |
| CRO_T020180 | - | - |
| CRO_T025322 | AT3G10220 (6.00E-107) | EMB2804|EMBRYO DEFECTIVE 2804 |
| CRO_T028016 | AT5G22220 (6.00E-11) | E2F1|E2F transcription factor 1 |
| CRO_T033395 | AT1G55680 (0) | Transducin/WD40 repeat-like superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001353 | protein import into nucleus, docking nuclear pore organization intracellular organelle part nuclear pore inner ring protein complex Transcription_related, Transcription factor: E2F-DP Transcription_related, Transcription factor: NF-YB Antigen processing and presentation Cell cycle structural constituent of nuclear pore protein heterodimerization activity | details |
| TreatCFM001363 | Ubiquitin_Proteasome_system, E3 adaptor: DWD S-adenosyl-L-methionine cycle II 2'-deoxymugineic acid phytosiderophore biosynthesis L-methionine degradation I (to L-homocysteine) L-methionine salvage cycle I (bacteria and plants) L-methionine salvage cycle II (plants) S-adenosyl-L-methionine biosynthesis ethylene biosynthesis I (plants) anaphase-promoting complex binding methionine adenosyltransferase activity ubiquitin-protein transferase activator activity potassium ion transmembrane transporter activity NOD-like receptor signaling pathway oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | details |
| TreatCFM001414 | protoheme IX ABC transporter activity heme-transporting ATPase activity intracellular outer membrane-bounded periplasmic space coenzyme A transmembrane transporter activity coenzyme A transmembrane transport cytoplasmic mRNA processing body assembly deadenylation-dependent decapping of nuclear-transcribed mRNA RNA degradation heme transport cytochrome complex assembly cytoplasmic mRNA processing body tRNA modification protein peptidyl-prolyl isomerization integral component of membrane peptidyl-prolyl cis-trans isomerase activity mitochondrial inner membrane trans-Golgi network endosome | details |
| TreatCFM001798 | protein heterodimerization activity posttranscriptional gene silencing by RNA production of small RNA involved in gene silencing by RNA Transcription_related, Transcription factor: NF-YC mRNA processing nucleosome nucleus Viral carcinogenesis Inositol phosphate metabolism | details |
| TreatCFM001818 | RNA degradation porin activity AU-rich element binding voltage-gated cation channel activity integral component of chloroplast outer membrane etioplast membrane pore complex Cellular senescence exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay deadenylation-dependent decapping of nuclear-transcribed mRNA U1 snRNA 3'-end processing U5 snRNA 3'-end processing regulation of ion transmembrane transport exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) nuclear polyadenylation-dependent tRNA catabolic process cytoplasmic mRNA processing body assembly nuclear polyadenylation-dependent mRNA catabolic process nuclear polyadenylation-dependent rRNA catabolic process nuclear mRNA surveillance U4 snRNA 3'-end processing nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' cytoplasmic exosome (RNase complex) nuclear exosome (RNase complex) Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase cellular macromolecule biosynthetic process cytoplasmic mRNA processing body DNA metabolic process Transcription_related, Transcription factor: B3 | details |
| TreatCFM001972 | formation of glycosidic bonds, GlycosylTransferases: GTnc deadenylation-dependent decapping of nuclear-transcribed mRNA cytoplasmic mRNA processing body assembly Other types of O-glycan biosynthesis RNA degradation cytoplasmic mRNA processing body cell wall organization | details |
| TreatCFM001973 | formation of glycosidic bonds, GlycosylTransferases: GTnc reactive oxygen species degradation superoxide radicals degradation Other types of O-glycan biosynthesis deadenylation-dependent decapping of nuclear-transcribed mRNA cytoplasmic mRNA processing body assembly catalase activity response to hydrogen peroxide RNA degradation hydrogen peroxide catabolic process cytoplasmic mRNA processing body Golgi membrane Peroxisome | details |
Expression profiles
 Show details about module gene expression profiling |