TreatCFM000094's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription regulator: MED6 | 0.003097526 | TF family |
| D-myo-inositol (1,4,5)-trisphosphate degradation | 0.039394449 | plantCyc |
| ethylene biosynthesis I (plants) | 0.039394449 | plantCyc |
| L-methionine salvage cycle II (plants) | 0.039394449 | plantCyc |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000965 | AT5G63100 (4.00E-89) | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| CRO_T001421 | - | - |
| CRO_T006500 | AT2G18150 (8.00E-94) | Peroxidase superfamily protein |
| CRO_T007662 | - | - |
| CRO_T008948 | - | - |
| CRO_T009216 | - | - |
| CRO_T010112 | - | - |
| CRO_T013185 | - | - |
| CRO_T013377 | AT1G23310 (3.00E-17) | AOAT1|ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 1; GGAT1|GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 1; GGT1|glutamate:glyoxylate aminotransferase |
| CRO_T013416 | - | - |
| CRO_T015353 | - | - |
| CRO_T016067 | AT3G15580 (3.00E-43) | APG8H|AUTOPHAGY 8H; ATG8I|AUTOPHAGY 8I |
| CRO_T016121 | - | - |
| CRO_T016211 | AT3G21350 (9.00E-23) | MED6|RNA polymerase transcriptional regulation mediator-related |
| CRO_T017474 | AT1G10095 (5.00E-80) | Protein prenylyltransferase superfamily protein |
| CRO_T018397 | AT1G16840 (1.00E-12) | unknown protein |
| CRO_T018413 | - | - |
| CRO_T018902 | - | - |
| CRO_T019223 | AT2G12400 (4.00E-76) | unknown protein |
| CRO_T019690 | - | - |
| CRO_T019807 | - | - |
| CRO_T020227 | - | - |
| CRO_T022256 | - | - |
| CRO_T024588 | - | - |
| CRO_T024927 | - | - |
| CRO_T025638 | - | - |
| CRO_T026424 | - | - |
| CRO_T026601 | - | - |
| CRO_T028104 | - | - |
| CRO_T029305 | - | - |
| CRO_T029314 | - | - |
| CRO_T030240 | - | - |
| CRO_T031255 | - | - |
| CRO_T031964 | - | - |
| CRO_T032654 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000040 | D-myo-inositol (1,4,5)-trisphosphate degradation Phenylpropanoid biosynthesis response to oxidative stress cellular oxidant detoxification hydrogen peroxide catabolic process | details |
| TreatCFM000080 | negative regulation of protein kinase activity protein kinase inhibitor activity double-stranded RNA binding protein kinase binding | details |
| TreatCFM000170 | pyruvate fermentation to ethanol II ribonuclease inhibitor activity oxaloacetate decarboxylase activity 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity carboxy-lyase activity RNA methyltransferase activity thiamine pyrophosphate binding | details |
| TreatCFM000266 | outer membrane | details |
| TreatCFM000357 | tRNA dihydrouridine synthesis mitotic spindle assembly checkpoint tRNA dihydrouridine synthase activity Cell cycle | details |
| TreatCFM000359 | Cytochrome_P450, Cytochrome P450: CYP71B | details |
| TreatCFM000408 | Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase Indole alkaloid biosynthesis BLOC-1 complex plastid nucleoid Transcription_related, Transcription factor: LOB phosphatidylinositol dephosphorylation fructose 6-phosphate metabolic process glycolytic process through fructose-6-phosphate response to light intensity Golgi vesicle budding phospholipid translocation ajmaline and sarpagine biosynthesis D-myo-inositol (1,4,5)-trisphosphate degradation glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) | details |
| TreatCFM000441 | alliin lyase activity Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III Wnt signaling pathway | details |
| TreatCFM000536 | D-myo-inositol (1,4,5)-trisphosphate degradation Phenylpropanoid biosynthesis extracellular region | details |
| TreatCFM000559 | details | |
| TreatCFM000736 | details | |
| TreatCFM000738 | Transcription_related, Transcription regulator: MED6 core mediator complex L-methionine salvage cycle II (plants) ethylene biosynthesis I (plants) mediator complex Protein_kinases_phosphatases, PPC:1.11.1: Legume Lectin Domain Kinase 1-aminocyclopropane-1-carboxylate biosynthetic process RNA polymerase II transcriptional preinitiation complex assembly | details |
| TreatCFM000789 | Taurine and hypotaurine metabolism Golgi stack anaerobic respiration Golgi to plasma membrane protein transport Golgi vesicle docking detection of hypoxia peptidyl-cysteine oxidation Autophagy - yeast intra-Golgi vesicle-mediated transport SNARE complex vesicle fusion exocytosis nucleic acid phosphodiester bond hydrolysis oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen SNAP receptor activity SNARE binding endonuclease activity ATPase activity | details |
| TreatCFM001137 | Apelin signaling pathway Transcription_related, Transcription regulator: GNAT cellular response to nitrogen starvation N-terminal protein amino acid acetylation autophagy protein acetyltransferase complex intracellular part ATP-dependent helicase activity peptide alpha-N-acetyltransferase activity | details |
| TreatCFM001290 | Protein_kinases_phosphatases, PPC:4.2.3: Calcium/Calmodulin Dependent Protein Kinase (CCamK) response to endoplasmic reticulum stress Plant-pathogen interaction | details |
| TreatCFM001330 | formation of glycosidic bonds, GlycosylTransferases: GTnc ribonuclease inhibitor activity triphosphatase activity oxaloacetate decarboxylase activity 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity regulation of RNA metabolic process protein targeting to ER response to light intensity plastid nucleoid signal recognition particle binding signal recognition particle, endoplasmic reticulum targeting Protein export regulation of gene expression negative regulation of catalytic activity root development | details |
| TreatCFM001378 | protein import into nucleus, docking protein import into nucleus, translocation cellular response to nitrogen starvation ribosomal protein import into nucleus Mismatch repair clathrin vesicle coat mismatch repair complex NLS-bearing protein import into nucleus autophagy nuclear membrane nuclear periphery Transcription_related, Transcription factor: MYB Apelin signaling pathway Phenylpropanoid biosynthesis very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II Fatty acid metabolism Ran GTPase binding nuclear localization sequence binding mismatched DNA binding | details |
| TreatCFM001417 | Transcription_related, Transcription regulator: GNAT Ctf18 RFC-like complex ribonucleoside-diphosphate reductase complex chromosome, centromeric region chromatin maintenance of mitotic sister chromatid cohesion protein acetyltransferase complex deoxyribonucleotide biosynthetic process cellular response to nitrogen starvation regulation of DNA replication DNA clamp loader activity ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor nucleoplasm peptide alpha-N-acetyltransferase activity Apelin signaling pathway autophagy N-terminal protein amino acid acetylation DNA replication protein binding Purine metabolism | details |
| TreatCFM001463 | MAPK signaling pathway plastid nucleoid response to light intensity Transcription_related, Transcription factor: NAC regulation of gene expression | details |
| TreatCFM001464 | MAPK signaling pathway response to light intensity plastid nucleoid regulation of gene expression Transcription_related, Transcription factor: C2H2 | details |
| TreatCFM001513 | MAPK signaling pathway D-myo-inositol (1,4,5)-trisphosphate degradation xylan biosynthesis plastid nucleoid exonuclease activity response to light intensity endonuclease activity cellulose synthase (UDP-forming) activity phosphatidylinositol dephosphorylation regulation of gene expression Transcription_related, Transcription factor: NAC cellulose biosynthetic process | details |
| TreatCFM001668 | helicase activity nucleic acid binding exocytosis vesicle fusion nucleic acid phosphodiester bond hydrolysis endonuclease activity SNARE binding SNAP receptor activity SNARE complex Spliceosome | details |
| TreatCFM001845 | polyubiquitin binding alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity Ubiquitin_Proteasome_system, E2: UBC hydrogen peroxide biosynthetic process galactolipid biosynthetic process N-Glycan biosynthesis membrane coat mitochondrial outer membrane protein complex response to cadmium ion structural molecule activity protein glycosylation | details |
Expression profiles
 Show details about module gene expression profiling |