TreatCFM001479's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| magnesium ion transmembrane transport | 8.71E-05 | GO:1903830 |
| magnesium ion transport | 8.71E-05 | GO:0015693 |
| magnesium ion transmembrane transporter activity | 0.000154901 | GO:0015095 |
| regulation of actin filament polymerization | 0.002413421 | GO:0030833 |
| response to very low light intensity stimulus | 0.002413421 | GO:0055122 |
| alanyl-tRNA aminoacylation | 0.002895763 | GO:0006419 |
| Ser-tRNA(Ala) hydrolase activity | 0.004826842 | GO:0002196 |
| alanine-tRNA ligase activity | 0.008041885 | GO:0004813 |
| regulation of translational fidelity | 0.00964228 | GO:0006450 |
| tRNA binding | 0.015666853 | GO:0000049 |
| vegetative to reproductive phase transition of meristem | 0.017191924 | GO:0010228 |
| actin cytoskeleton | 0.021955696 | GO:0015629 |
| integral component of membrane | 0.021955696 | GO:0016021 |
| viral nucleocapsid | 0.025710013 | GO:0019013 |
| intracellular ribonucleoprotein complex | 0.025710013 | GO:0030529 |
| Endocytosis | 0.026288138 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004536 | - | - |
| CRO_T012103 | AT1G14710 (9.00E-34) | hydroxyproline-rich glycoprotein family protein |
| CRO_T016942 | AT1G01730 (4.00E-30) | unknown protein |
| CRO_T017911 | AT2G42780 (3.00E-48) | unknown protein |
| CRO_T018721 | AT4G09810 (6.00E-43) | Nucleotide-sugar transporter family protein |
| CRO_T020879 | AT1G71900 (6.00E-26) | Protein of unknown function (DUF803) |
| CRO_T020880 | AT1G71900 (5.00E-83) | Protein of unknown function (DUF803) |
| CRO_T025292 | AT5G66010 (3.00E-10) | RNA-binding (RRM/RBD/RNP motifs) family protein |
| CRO_T027761 | AT3G16565 (2.00E-44) | alanine-tRNA ligases; nucleic acid binding; ligases, forming aminoacyl-tRNA and related compounds; nucleotide binding; ATP binding |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001387 | L-mimosine synthase activity beta-pyrazolylalanine synthase activity pyrazolylalanine synthase activity cysteine synthase activity 3-phosphoinositide biosynthesis adenosine ribonucleotides de novo biosynthesis L-cysteine biosynthesis I Ubiquitin_Proteasome_system, E3: U-box Autophagy - animal cellular amino acid biosynthetic process cysteine biosynthetic process from serine plant-type vacuole regulation of cellular process intracellular ribonucleoprotein complex viral nucleocapsid | details |
| TreatCFM001705 | cytoplasmic translational termination plastid translation endopeptidase activity adenyl-nucleotide exchange factor activity ribosomal large subunit binding chaperone binding isomerase activity regulation of catalytic activity protein homodimerization activity mitochondrial matrix thylakoid Oxidative phosphorylation copper ion binding | details |
| TreatCFM001733 | CTP:2-trans,-6-trans-farnesol kinase activity geranylgeraniol kinase activity geraniol kinase activity tocopherol cyclase activity farnesylcysteine salvage pathway vitamin E biosynthesis (tocopherols) small molecule metabolic process organic cyclic compound metabolic process farnesol metabolic process heterocycle metabolic process carpel development cellular lipid metabolic process magnesium ion transmembrane transport magnesium ion transport magnesium ion transmembrane transporter activity iron-sulfur cluster assembly MAPK signaling pathway Terpenoid backbone biosynthesis Ubiquinone and other terpenoid-quinone biosynthesis nucleotidyltransferase activity response to abscisic acid chloroplast part | details |
| TreatCFM001881 | alanyl-tRNA aminoacylation Ser-tRNA(Ala) hydrolase activity alanine-tRNA ligase activity regulation of translational fidelity tRNA binding viral nucleocapsid intracellular ribonucleoprotein complex Oxidative phosphorylation | details |
| TreatCFM001882 | Ubiquitin_Proteasome_system, E1: ThiF tetrapyrrole biosynthesis I (from glutamate) regulation of actin filament polymerization alanyl-tRNA aminoacylation Ser-tRNA(Ala) hydrolase activity glutamyl-tRNA reductase activity alanine-tRNA ligase activity protoporphyrinogen IX biosynthetic process regulation of translational fidelity phospholipid translocation actin cytoskeleton very long chain fatty acid biosynthesis I phospholipid-translocating ATPase activity tRNA binding Fatty acid elongation Porphyrin and chlorophyll metabolism | details |
| TreatCFM002008 | MAPK signaling pathway - fly reactive oxygen species degradation superoxide radicals degradation Transcription_related, Transcription factor: TUB Transcription_related, Transcription regulator: SWI/SNF-BAF60b cilium mitochondrial inner membrane peptidase complex removal of superoxide radicals thylakoid membrane organization mitochondrial respiratory chain complex assembly protein processing involved in protein targeting to mitochondrion signal peptide processing protein localization to cilium Protein export phosphatidylinositol binding superoxide dismutase activity mitochondrial matrix serine-type endopeptidase activity | details |
Expression profiles
 Show details about module gene expression profiling |