TreatCFM001452's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| UDP-N-acetyl-D-glucosamine biosynthesis II | 0.001860602 | plantCyc |
| mRNA guanylyltransferase activity | 0.00706193 | GO:0004484 |
| glutamine-fructose-6-phosphate transaminase (isomerizing) activity | 0.00706193 | GO:0004360 |
| polynucleotide 5'-phosphatase activity | 0.00706193 | GO:0004651 |
| serine-type endopeptidase activity | 0.00706193 | GO:0004252 |
| serine-type exopeptidase activity | 0.007532057 | GO:0070008 |
| 7-methylguanosine mRNA capping | 0.01182473 | GO:0006370 |
| UDP-N-acetylglucosamine metabolic process | 0.01182473 | GO:0006047 |
| carbohydrate derivative biosynthetic process | 0.01182473 | GO:1901137 |
| polynucleotide 5' dephosphorylation | 0.01182473 | GO:0098507 |
| proteolysis | 0.01182473 | GO:0006508 |
| DNA ligation | 0.01182473 | GO:0006266 |
| voltage-gated chloride channel activity | 0.012548977 | GO:0005247 |
| protein tyrosine/serine/threonine phosphatase activity | 0.012937691 | GO:0008138 |
| DNA ligase (ATP) activity | 0.012937691 | GO:0003910 |
| Renin-angiotensin system | 0.013783459 | KEGG pathway |
| chloride transport | 0.013816317 | GO:0006821 |
| fructose 6-phosphate metabolic process | 0.016618335 | GO:0006002 |
| cellular macromolecule biosynthetic process | 0.018795541 | GO:0034645 |
| regulation of anion transmembrane transport | 0.019329129 | GO:1903959 |
| Cell cycle - Caulobacter | 0.01978739 | KEGG pathway |
| peptidyl-tyrosine dephosphorylation | 0.020861124 | GO:0035335 |
| protein tyrosine phosphatase activity | 0.020892722 | GO:0004725 |
| DNA recombination | 0.025148064 | GO:0006310 |
| unidimensional cell growth | 0.026918226 | GO:0009826 |
| DNA metabolic process | 0.027339273 | GO:0006259 |
| ion transmembrane transport | 0.027339273 | GO:0034220 |
| nucleotidyltransferase activity | 0.031926218 | GO:0016779 |
| Amino sugar and nucleotide sugar metabolism | 0.035938682 | KEGG pathway |
| mRNA surveillance pathway | 0.035938682 | KEGG pathway |
| DNA repair | 0.048865177 | GO:0006281 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001297 | AT1G14460 (9.00E-99) | AAA-type ATPase family protein |
| CRO_T002504 | AT1G02560 (8.00E-19) | CLPP5|nuclear encoded CLP protease 5; NCLPP1|NUCLEAR-ENCODED CLPP 1; NCLPP5|NUCLEAR CLPP 5 |
| CRO_T004688 | AT5G26240 (1.00E-74) | CLC-D|chloride channel D |
| CRO_T016411 | AT3G08790 (1.00E-102) | ENTH/VHS/GAT family protein |
| CRO_T021021 | AT3G24090 (0) | GFAT|L-glutamine D-fructose-6-phosphate amidotransferase |
| CRO_T032772 | AT3G09100 (5.00E-86) | mRNA capping enzyme family protein |
| CRO_T033531 | AT1G50380 (1.00E-42) | Prolyl oligopeptidase family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000339 | DNA ligation protein initiator methionine removal polynucleotide 5' dephosphorylation 7-methylguanosine mRNA capping polynucleotide 5'-phosphatase activity mRNA guanylyltransferase activity metalloaminopeptidase activity 1-phosphatidylinositol 4-kinase activity protein tyrosine/serine/threonine phosphatase activity DNA ligase (ATP) activity mRNA surveillance pathway 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis homogalacturonan degradation hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 Transcription_related, Transcription factor: NAC protein tyrosine phosphatase activity cytosolic ribosome phosphatidylinositol phosphorylation DNA recombination peptidyl-tyrosine dephosphorylation protein peptidyl-prolyl isomerization | details |
| TreatCFM000826 | mRNA surveillance pathway Biotin metabolism Renin-angiotensin system Ubiquitin_Proteasome_system, E3: HECT biotin synthase activity serine-type exopeptidase activity | details |
| TreatCFM000853 | Cell cycle - Caulobacter detoxification of reactive carbonyls in chloroplasts traumatin and (Z)-3-hexen-1-yl acetate biosynthesis Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase gluconeogenesis I nucleolar ribonuclease P complex calmodulin-dependent protein kinase activity ribonuclease P activity calcium-dependent protein serine/threonine kinase activity O-acetyltransferase activity peptidyl-serine phosphorylation protein autophosphorylation abscisic acid-activated signaling pathway gene silencing by RNA RNA phosphodiester bond hydrolysis, endonucleolytic cell wall organization or biogenesis | details |
| TreatCFM000854 | gluconeogenesis I Cell cycle - Caulobacter Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase gene expression cellular nitrogen compound biosynthetic process cellular macromolecule biosynthetic process calmodulin-dependent protein kinase activity calcium-dependent protein serine/threonine kinase activity peptidyl-serine phosphorylation protein autophosphorylation abscisic acid-activated signaling pathway primary metabolic process intracellular organelle Spliceosome calmodulin binding serine-type endopeptidase activity | details |
| TreatCFM000963 | intracellular protein transport phosphatidylethanolamine biosynthesis I 1-phosphatidylinositol 4-kinase activity protein methyltransferase activity voltage-gated chloride channel activity protein methylation chloride transport phosphatidylinositol-mediated signaling 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis Ran GTPase binding regulation of anion transmembrane transport phosphatidylinositol phosphorylation unidimensional cell growth ion transmembrane transport Inositol phosphate metabolism Lysosome clathrin adaptor complex protein transporter activity vesicle-mediated transport RNA transport integral component of membrane | details |
| TreatCFM001239 | starch biosynthesis glucose-1-phosphate adenylyltransferase activity positive regulation of proteasomal ubiquitin-dependent protein catabolic process starch biosynthetic process glycogen biosynthetic process Hedgehog signaling pathway protein ubiquitination involved in ubiquitin-dependent protein catabolic process protein polyubiquitination biosynthetic process ubiquitin ligase complex ubiquitin conjugating enzyme binding Cell cycle - Caulobacter Ubiquitin_Proteasome_system, E3 adaptor: BTB | details |
| TreatCFM001412 | formation of glycosidic bonds, GlycosylTransferases: GTnc Cell cycle - Caulobacter Transcription_related, Transcription factor: bZIP chaperone-mediated protein folding protein peptidyl-prolyl isomerization FK506 binding peptidyl-prolyl cis-trans isomerase activity serine-type endopeptidase activity | details |
| TreatCFM001609 | mRNA guanylyltransferase activity polynucleotide 5'-phosphatase activity 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity arylformamidase activity tryptophan catabolic process to kynurenine DNA ligation polynucleotide 5' dephosphorylation 7-methylguanosine mRNA capping phospholipid-translocating ATPase activity protein tyrosine/serine/threonine phosphatase activity DNA ligase (ATP) activity phospholipid translocation peptidyl-tyrosine dephosphorylation protein tyrosine phosphatase activity mRNA surveillance pathway DNA recombination gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt DNA repair | details |
| TreatCFM001638 | Protein_kinases_phosphatases, PPC:2.2.1: Unknown Function Kinase Cell cycle - Caulobacter Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family protein kinase activity | details |
| TreatCFM001855 | Cell cycle - Caulobacter detoxification of reactive carbonyls in chloroplasts traumatin and (Z)-3-hexen-1-yl acetate biosynthesis cytosol nuclear envelope chaperone-mediated protein folding cell wall organization or biogenesis protein import into nucleus protein peptidyl-prolyl isomerization protein transporter activity peptidyl-prolyl cis-trans isomerase activity FK506 binding O-acetyltransferase activity serine-type endopeptidase activity | details |
| TreatCFM001945 | Ubiquitin_Proteasome_system, E3: HECT DNA endoreduplication trichome branching Cell cycle - Caulobacter Ubiquitin mediated proteolysis protein ubiquitination involved in ubiquitin-dependent protein catabolic process plasma membrane | details |
| TreatCFM002001 | chaperone-mediated protein folding cytoplasmic translation FK506 binding peptidyl-prolyl cis-trans isomerase activity | details |
| TreatCFM002071 | phosphatidylinositol-mediated signaling proteolysis protein initiator methionine removal metalloaminopeptidase activity 1-phosphatidylinositol 4-kinase activity phosphatidylinositol dephosphorylation hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 cytosolic ribosome Cell cycle - Caulobacter Inositol phosphate metabolism phosphatidylinositol phosphorylation 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis D-myo-inositol (1,4,5)-trisphosphate degradation homogalacturonan degradation protein peptidyl-prolyl isomerization peptidyl-prolyl cis-trans isomerase activity protein folding | details |
| TreatCFM002127 | DNA ligation polynucleotide 5' dephosphorylation 7-methylguanosine mRNA capping mRNA guanylyltransferase activity polynucleotide 5'-phosphatase activity Cell cycle - Caulobacter DNA ligase (ATP) activity protein tyrosine/serine/threonine phosphatase activity cellular macromolecule biosynthetic process mRNA surveillance pathway peptidyl-tyrosine dephosphorylation DNA recombination protein tyrosine phosphatase activity DNA metabolic process nucleotidyltransferase activity proteasome-mediated ubiquitin-dependent protein catabolic process DNA repair | details |
Expression profiles
 Show details about module gene expression profiling |