TreatCFM001930's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| response to extracellular stimulus | 0.008547482 | GO:0009991 |
| lateral root development | 0.008547482 | GO:0048527 |
| reactive oxygen species metabolic process | 0.008547482 | GO:0072593 |
| organ morphogenesis | 0.008547482 | GO:0009887 |
| endoplasmic reticulum unfolded protein response | 0.008547482 | GO:0030968 |
| regulation of root development | 0.008547482 | GO:2000280 |
| fruit development | 0.008547482 | GO:0010154 |
| defense response to fungus, incompatible interaction | 0.008547482 | GO:0009817 |
| leucopelargonidin and leucocyanidin biosynthesis | 0.009298062 | plantCyc |
| negative regulation of abscisic acid-activated signaling pathway | 0.013289012 | GO:0009788 |
| Ras signaling pathway | 0.014246921 | KEGG pathway |
| histone acetylation | 0.016224386 | GO:0016573 |
| Transcription_related, Transcription regulator: mTERF | 0.018571412 | TF family |
| heterotrimeric G-protein complex | 0.018767725 | GO:0005834 |
| jasmonic acid mediated signaling pathway | 0.020170925 | GO:0009867 |
| Cul4-RING E3 ubiquitin ligase complex | 0.020633518 | GO:0080008 |
| Phenylpropanoid biosynthesis | 0.020976835 | KEGG pathway |
| response to ethylene | 0.022036018 | GO:0009723 |
| RNA degradation | 0.022815599 | KEGG pathway |
| exocytosis | 0.025572074 | GO:0006887 |
| exocyst | 0.029977819 | GO:0000145 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000902 | AT2G31670 (2.00E-66) | UP3|UP3 |
| CRO_T009098 | AT2G36000 (2.00E-21) | EMB3114|EMBRYO DEFECTIVE 3114 |
| CRO_T018900 | AT2G30800 (1.00E-23) | HVT1|helicase in vascular tissue and tapetum |
| CRO_T021871 | AT1G28220 (3.00E-87) | ATPUP3|purine permease 3 |
| CRO_T022182 | AT2G23910 (1.00E-103) | NAD(P)-binding Rossmann-fold superfamily protein |
| CRO_T022274 | AT1G07000 (0) | ATEXO70B2|exocyst subunit exo70 family protein B2 |
| CRO_T022370 | AT1G44120 (0) | CSI2|CELLULOSE SYNTHASE INTERACTIVE 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000122 | 3-hydroxyisobutyryl-CoA hydrolase activity L-valine degradation I histone acetyltransferase activity heterotrimeric G-protein complex Cul4-RING E3 ubiquitin ligase complex organ morphogenesis regulation of root development lateral root development fruit development defense response to fungus, incompatible interaction response to extracellular stimulus endoplasmic reticulum unfolded protein response reactive oxygen species metabolic process negative regulation of abscisic acid-activated signaling pathway Ras signaling pathway histone acetylation jasmonic acid mediated signaling pathway Transcription_related, Transcription regulator: mTERF response to ethylene | details |
| TreatCFM000155 | dTTP biosynthetic process dTDP biosynthetic process dUDP biosynthetic process positive regulation of autophagy response to extracellular stimulus thymidylate kinase activity organ morphogenesis pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) pyrimidine deoxyribonucleotides de novo biosynthesis I regulation of root development lateral root development reactive oxygen species metabolic process endoplasmic reticulum unfolded protein response fruit development RNA biosynthetic process defense response to fungus, incompatible interaction uridylate kinase activity endoplasmic reticulum heterotrimeric G-protein complex negative regulation of abscisic acid-activated signaling pathway Cul4-RING E3 ubiquitin ligase complex Transcription_related, Transcription factor: AP2 Transcription_related, Transcription regulator: mTERF histone acetyltransferase activity histone acetylation Pyrimidine metabolism Ras signaling pathway jasmonic acid mediated signaling pathway response to ethylene phosphoprotein phosphatase activity DNA-directed RNA polymerase activity | details |
| TreatCFM000270 | CMP-3-deoxy-D-manno-octulosonate biosynthesis 3-deoxy-8-phosphooctulonate synthase activity voltage-gated potassium channel activity Lipopolysaccharide biosynthesis clathrin adaptor complex GTPase activator activity cellular response to DNA damage stimulus potassium ion transport regulation of membrane potential Fanconi anemia pathway Lysosome protein transporter activity biosynthetic process ion transmembrane transport positive regulation of GTPase activity DNA metabolic process cytoplasm Plant-pathogen interaction Endocytosis vesicle-mediated transport formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM001101 | mitochondrial RNA metabolic process Transcription_related, Transcription regulator: SNF2 RNA modification large ribosomal subunit rRNA binding protein domain specific binding MAPK signaling pathway - yeast Homologous recombination mitochondrial large ribosomal subunit | details |
| TreatCFM001155 | regulation of root development response to extracellular stimulus lateral root development organ morphogenesis fruit development defense response to fungus, incompatible interaction reactive oxygen species metabolic process endoplasmic reticulum unfolded protein response heterotrimeric G-protein complex Cul4-RING E3 ubiquitin ligase complex negative regulation of abscisic acid-activated signaling pathway histone acetylation histone acetyltransferase activity glucan endo-1,3-beta-D-glucosidase activity oxidized purine nucleobase lesion DNA N-glycosylase activity Ras signaling pathway jasmonic acid mediated signaling pathway damaged DNA binding response to ethylene adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: mTERF cytosolic small ribosomal subunit DNA repair small GTPase mediated signal transduction | details |
| TreatCFM001331 | 3-deoxy-8-phosphooctulonate synthase activity thymidylate kinase activity response to extracellular stimulus dUDP biosynthetic process dTTP biosynthetic process dTDP biosynthetic process organ morphogenesis regulation of root development reactive oxygen species metabolic process lateral root development CMP-3-deoxy-D-manno-octulosonate biosynthesis pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) fruit development endoplasmic reticulum unfolded protein response uridylate kinase activity defense response to fungus, incompatible interaction pyrimidine deoxyribonucleotides de novo biosynthesis I endoplasmic reticulum heterotrimeric G-protein complex negative regulation of abscisic acid-activated signaling pathway histone acetyltransferase activity Cul4-RING E3 ubiquitin ligase complex histone acetylation Transcription_related, Transcription regulator: mTERF Lipopolysaccharide biosynthesis jasmonic acid mediated signaling pathway response to ethylene Ras signaling pathway Pyrimidine metabolism biosynthetic process helicase activity RNA degradation | details |
| TreatCFM001493 | activation of MAPK activity defense response, incompatible interaction fucose biosynthetic process xyloglucan biosynthetic process endomembrane system organization Ribosome MAP kinase kinase activity lipid transporter activity Protein_kinases_phosphatases, PPC:4.1.4: MAP2K structural constituent of ribosome 5S rRNA binding MAP kinase activity translation lipid transport salicylic acid mediated signaling pathway unidimensional cell growth adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII integral component of Golgi membrane MAPK cascade aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) detoxification of reactive carbonyls in chloroplasts Flavonoid biosynthesis flavonoid biosynthesis (in equisetum) leucodelphinidin biosynthesis NAD/NADH phosphorylation and dephosphorylation pinobanksin biosynthesis xyloglucan biosynthesis Lysosome single-organism metabolic process | details |
| TreatCFM002101 | CMP-3-deoxy-D-manno-octulosonate biosynthesis RNA degradation Lipopolysaccharide biosynthesis fruit development organ morphogenesis reactive oxygen species metabolic process endoplasmic reticulum unfolded protein response lateral root development regulation of root development response to extracellular stimulus defense response to fungus, incompatible interaction 3-deoxy-8-phosphooctulonate synthase activity Autophagy - animal Ras signaling pathway Protein_kinases_phosphatases, PPC:1.1.1: Leucine-rich transmembrane protein kinase/Strubbelig Receptor Family 1 ATG1/ULK1 kinase complex heterotrimeric G-protein complex negative regulation of abscisic acid-activated signaling pathway autophagy histone acetylation ATP binding large ribosomal subunit rRNA binding Cul4-RING E3 ubiquitin ligase complex histone acetyltransferase activity Transcription_related, Transcription regulator: mTERF jasmonic acid mediated signaling pathway response to ethylene poly(A) RNA binding biosynthetic process RNA processing | details |
| TreatCFM002139 | geranylgeraniol kinase activity geraniol kinase activity CTP:2-trans,-6-trans-farnesol kinase activity soluble NSF attachment protein activity farnesylcysteine salvage pathway SNARE complex disassembly farnesol metabolic process protein import syntaxin binding protein targeting membrane fusion carpel development adenosine ribonucleotides de novo biosynthesis Transcription_related, Transcription factor: FAR1 ABC transporters Autophagy - yeast Protein export Terpenoid backbone biosynthesis ATP binding nucleotidyltransferase activity amino acid binding | details |
| TreatCFM002144 | glutaminyl-tRNAgln biosynthesis via transamidation ATG1/ULK1 kinase complex heterotrimeric G-protein complex glutamyl-tRNA(Gln) amidotransferase complex lateral root development glutaminyl-tRNAGln biosynthesis via transamidation response to extracellular stimulus regulation of root development organ morphogenesis reactive oxygen species metabolic process glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity endoplasmic reticulum unfolded protein response fruit development defense response to fungus, incompatible interaction mitochondrial translation negative regulation of abscisic acid-activated signaling pathway Cul4-RING E3 ubiquitin ligase complex autophagy histone acetylation Transcription_related, Transcription regulator: mTERF Autophagy - animal Ras signaling pathway histone acetyltransferase activity jasmonic acid mediated signaling pathway response to ethylene exocyst exocytosis Aminoacyl-tRNA biosynthesis RNA degradation helicase activity | details |
Expression profiles
 Show details about module gene expression profiling |