TreatCFM001967's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| protein transmembrane transport | 0.005395638 | GO:0071806 |
| protein localization to organelle | 0.005395638 | GO:0033365 |
| snRNA transcription | 0.005395638 | GO:0009301 |
| Base excision repair | 0.00566078 | KEGG pathway |
| DNA-3-methyladenine glycosylase activity | 0.007793238 | GO:0008725 |
| protein channel activity | 0.007793238 | GO:0015266 |
| base-excision repair | 0.013469578 | GO:0006284 |
| isoflavonoid biosynthesis II | 0.019804535 | plantCyc |
| benzoate biosynthesis I (CoA-dependent, β-oxidative) | 0.022199633 | plantCyc |
| peptidase activity | 0.027560718 | GO:0008233 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008030 | AT3G53270 (5.00E-51) | Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein |
| CRO_T013308 | AT1G14770 (1.00E-10) | RING/FYVE/PHD zinc finger superfamily protein |
| CRO_T020093 | AT5G16080 (3.00E-30) | AtCXE17|carboxyesterase 17 |
| CRO_T021390 | AT3G25120 (4.00E-39) | Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein |
| CRO_T024353 | AT1G16860 (0) | Ubiquitin-specific protease family C19-related protein |
| CRO_T026260 | AT1G21410 (0.00000001) | SKP2A|F-box/RNI-like superfamily protein |
| CRO_T029339 | AT5G57970 (3.00E-90) | DNA glycosylase superfamily protein |
| CRO_T032792 | AT2G20210 (2.00E-43) | RNI-like superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000689 | S-adenosyl-L-methionine cycle II 2'-deoxymugineic acid phytosiderophore biosynthesis baicalein degradation (hydrogen peroxide detoxification) L-methionine degradation I (to L-homocysteine) L-methionine salvage cycle I (bacteria and plants) L-methionine salvage cycle II (plants) S-adenosyl-L-methionine biosynthesis wogonin metabolism | details |
| TreatCFM000998 | L-leucine biosynthesis DNA-3-methyladenine glycosylase activity hydro-lyase activity protein histidine kinase binding protein metabolic process base-excision repair 2-Oxocarboxylic acid metabolism Base excision repair | details |
| TreatCFM001118 | pyruvate decarboxylation to acetyl CoA auxin efflux transmembrane transporter activity protein histidine kinase binding auxin efflux protein metabolic process auxin homeostasis auxin-activated signaling pathway auxin polar transport pollen development Transcription_related, Transcription factor: bHLH | details |
| TreatCFM001322 | protein localization to organelle protein transmembrane transport ribonucleoside binding protein channel activity GTPase activator activity DNA-directed RNA polymerase activity | details |
| TreatCFM001328 | Nucleotide excision repair 1,3-beta-D-glucan synthase activity protein histidine kinase binding DNA-3-methyladenine glycosylase activity Base excision repair (1->3)-beta-D-glucan biosynthetic process protein metabolic process base-excision repair 1,3-beta-D-glucan synthase complex | details |
| TreatCFM001386 | RNA polymerase III core binding transcription factor TFIIIB complex assembly protein transmembrane transport protein localization to organelle negative regulation of transcription from RNA polymerase III promoter protein channel activity sugar transmembrane transporter activity oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor protein disulfide oxidoreductase activity glycerol ether metabolic process sulfate assimilation cellular response to oxidative stress carbohydrate transport | details |
| TreatCFM001669 | Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase mevalonate pathway I Carbon metabolism protein transmembrane transport protein localization to organelle cysteine biosynthetic process from serine acetyl-CoA C-acetyltransferase activity cysteine synthase activity protein channel activity cellular amino acid biosynthetic process Plant-pathogen interaction RNA degradation | details |
| TreatCFM001678 | Nucleotide excision repair Base excision repair beta-tubulin binding DNA-3-methyladenine glycosylase activity protein histidine kinase binding Group II intron splicing protein metabolic process tubulin complex assembly post-chaperonin tubulin folding pathway microtubule cytoskeleton organization base-excision repair cytochrome complex assembly GTPase activator activity positive regulation of GTPase activity | details |
| TreatCFM001708 | L-leucine biosynthesis hydro-lyase activity beta-tubulin binding DNA-3-methyladenine glycosylase activity Transcription_related, Transcription regulator: SET Base excision repair Lysine degradation 2-Oxocarboxylic acid metabolism tubulin complex assembly post-chaperonin tubulin folding pathway GTPase activator activity microtubule cytoskeleton organization base-excision repair | details |
| TreatCFM001738 | Base excision repair sepal formation regulation of root meristem growth leaf formation leaf shaping regulation of histone methylation carpel development stamen development leaf vascular tissue pattern formation meristem structural organization DNA-3-methyladenine glycosylase activity regulation of flower development base-excision repair peptidyl-prolyl cis-trans isomerase activity histone binding chromatin binding protein peptidyl-prolyl isomerization | details |
| TreatCFM001834 | snRNA transcription protein transmembrane transport protein localization to organelle protein channel activity GTPase activator activity Endocytosis peptidase activity positive regulation of GTPase activity pollen development embryo development ending in seed dormancy | details |
| TreatCFM001929 | Ubiquitin_Proteasome_system, E2: UBC Ubiquitin mediated proteolysis microtubule proteolysis | details |
| TreatCFM001987 | protein transmembrane transport protein localization to organelle cysteine biosynthetic process from serine cellular amino acid biosynthetic process protein channel activity cysteine synthase activity positive regulation of GTPase activity pollen development MAPK signaling pathway GTPase activator activity embryo development ending in seed dormancy Endocytosis RNA degradation | details |
| TreatCFM002000 | snRNA transcription tubulin complex assembly protein transmembrane transport post-chaperonin tubulin folding pathway protein localization to organelle beta-tubulin binding microtubule cytoskeleton organization protein channel activity GTPase activator activity positive regulation of GTPase activity peptidase activity | details |
| TreatCFM002072 | Measles peptidase activity proteolysis | details |
Expression profiles
 Show details about module gene expression profiling |