TreatCFM001328's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Nucleotide excision repair | 0.004962045 | KEGG pathway |
| 1,3-beta-D-glucan synthase activity | 0.005303809 | GO:0003843 |
| protein histidine kinase binding | 0.005303809 | GO:0043424 |
| DNA-3-methyladenine glycosylase activity | 0.005303809 | GO:0008725 |
| Base excision repair | 0.007432517 | KEGG pathway |
| (1->3)-beta-D-glucan biosynthetic process | 0.007572841 | GO:0006075 |
| protein metabolic process | 0.007572841 | GO:0019538 |
| base-excision repair | 0.007572841 | GO:0006284 |
| 1,3-beta-D-glucan synthase complex | 0.024108225 | GO:0000148 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002886 | AT3G07160 (2.00E-90) | ATGSL10|glucan synthase-like 10 |
| CRO_T008861 | - | - |
| CRO_T011029 | AT3G07040 (3.00E-30) | RPM1|RESISTANCE TO P. SYRINGAE PV MACULICOLA 1; RPS3|RESISTANCE TO PSEUDOMONAS SYRINGAE 3 |
| CRO_T013308 | AT1G14770 (1.00E-10) | RING/FYVE/PHD zinc finger superfamily protein |
| CRO_T026596 | AT4G12060 (2.00E-67) | Double Clp-N motif protein |
| CRO_T029339 | AT5G57970 (3.00E-90) | DNA glycosylase superfamily protein |
| CRO_T033074 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000689 | S-adenosyl-L-methionine cycle II 2'-deoxymugineic acid phytosiderophore biosynthesis baicalein degradation (hydrogen peroxide detoxification) L-methionine degradation I (to L-homocysteine) L-methionine salvage cycle I (bacteria and plants) L-methionine salvage cycle II (plants) S-adenosyl-L-methionine biosynthesis wogonin metabolism | details |
| TreatCFM000747 | L-histidine biosynthesis adenylosuccinate synthase activity histidinol dehydrogenase activity 'de novo' AMP biosynthetic process endoplasmic reticulum tubular network organization adenosine ribonucleotides de novo biosynthesis endoplasmic reticulum tubular network histidine biosynthetic process Group II intron splicing protein metabolic process | details |
| TreatCFM000998 | L-leucine biosynthesis DNA-3-methyladenine glycosylase activity hydro-lyase activity protein histidine kinase binding protein metabolic process base-excision repair 2-Oxocarboxylic acid metabolism Base excision repair | details |
| TreatCFM001003 | L-histidine biosynthesis L-serine transport protein metabolic process histidine biosynthetic process histidinol dehydrogenase activity L-serine transmembrane transporter activity chloroplast stroma protein processing protein histidine kinase binding protein-cysteine S-palmitoyltransferase activity phosphatidylinositol binding pollen development Biosynthesis of amino acids Endocytosis | details |
| TreatCFM001118 | pyruvate decarboxylation to acetyl CoA auxin efflux transmembrane transporter activity protein histidine kinase binding auxin efflux protein metabolic process auxin homeostasis auxin-activated signaling pathway auxin polar transport pollen development Transcription_related, Transcription factor: bHLH | details |
| TreatCFM001294 | phosphatidylinositol binding regulation of barrier septum assembly hypoxanthine salvage inosine biosynthetic process adenosine catabolic process histidinol dehydrogenase activity flavin-linked sulfhydryl oxidase activity regulation of ruffle assembly Ubiquitin_Proteasome_system, E3: HECT Transcription_related, Transcription regulator: mTERF ATPase binding adenosine deaminase activity detoxification of reactive carbonyls in chloroplasts L-histidine biosynthesis traumatin and (Z)-3-hexen-1-yl acetate biosynthesis protein metabolic process chloroplast fission histidine biosynthetic process endosome organization trichome branching protein histidine kinase binding | details |
| TreatCFM001342 | intra-Golgi vesicle-mediated transport Nucleotide excision repair Basal transcription factors formation of glycosidic bonds, GlycosylTransferases: GTnc integral component of Golgi membrane | details |
| TreatCFM001376 | priming of cellular response to stress activation of MAPK activity involved in osmosensory signaling pathway camalexin biosynthetic process inflorescence development pollen tube guidance jasmonic acid biosynthesis protein metabolic process plant ovule development metalloexopeptidase activity Protein_kinases_phosphatases, PPC:4.5.1: MAPK Family redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 response to UV-B response to osmotic stress aminopeptidase activity MAP kinase activity MAPK signaling pathway - plant MAPK cascade pollen development isomerase activity | details |
| TreatCFM001678 | Nucleotide excision repair Base excision repair beta-tubulin binding DNA-3-methyladenine glycosylase activity protein histidine kinase binding Group II intron splicing protein metabolic process tubulin complex assembly post-chaperonin tubulin folding pathway microtubule cytoskeleton organization base-excision repair cytochrome complex assembly GTPase activator activity positive regulation of GTPase activity | details |
| TreatCFM001708 | L-leucine biosynthesis hydro-lyase activity beta-tubulin binding DNA-3-methyladenine glycosylase activity Transcription_related, Transcription regulator: SET Base excision repair Lysine degradation 2-Oxocarboxylic acid metabolism tubulin complex assembly post-chaperonin tubulin folding pathway GTPase activator activity microtubule cytoskeleton organization base-excision repair | details |
| TreatCFM001738 | Base excision repair sepal formation regulation of root meristem growth leaf formation leaf shaping regulation of histone methylation carpel development stamen development leaf vascular tissue pattern formation meristem structural organization DNA-3-methyladenine glycosylase activity regulation of flower development base-excision repair peptidyl-prolyl cis-trans isomerase activity histone binding chromatin binding protein peptidyl-prolyl isomerization | details |
| TreatCFM001967 | protein transmembrane transport protein localization to organelle snRNA transcription Base excision repair DNA-3-methyladenine glycosylase activity protein channel activity base-excision repair isoflavonoid biosynthesis II benzoate biosynthesis I (CoA-dependent, β-oxidative) peptidase activity | details |
| TreatCFM002098 | GDP-mannose biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) Nucleotide excision repair biosynthetic process Fructose and mannose metabolism | details |
Expression profiles
 Show details about module gene expression profiling |