TissueCFM000264's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| NatA complex | 0.001950499 | GO:0031415 |
| N-terminal peptidyl-serine acetylation | 0.002570268 | GO:0017198 |
| N-terminal peptidyl-glutamic acid acetylation | 0.002570268 | GO:0018002 |
| internal protein amino acid acetylation | 0.002570268 | GO:0006475 |
| peptide-serine-N-acetyltransferase activity | 0.003218323 | GO:1990189 |
| peptide-glutamate-N-acetyltransferase activity | 0.003218323 | GO:1990190 |
| Transcription_related, Transcription regulator: GNAT | 0.004602101 | TF family |
| cytosolic ribosome | 0.005847174 | GO:0022626 |
| RNA binding | 0.005972934 | GO:0003723 |
| ARF guanyl-nucleotide exchange factor activity | 0.006433793 | GO:0005086 |
| spliceosomal complex | 0.006817168 | GO:0005681 |
| regulation of ARF protein signal transduction | 0.007707385 | GO:0032012 |
| ribonuclease III activity | 0.008360841 | GO:0004525 |
| MicroRNAs in cancer | 0.012667941 | KEGG pathway |
| RNA phosphodiester bond hydrolysis, endonucleolytic | 0.023852324 | GO:0090502 |
| positive regulation of GTPase activity | 0.026402295 | GO:0043547 |
| RNA processing | 0.026402295 | GO:0006396 |
| mRNA splicing, via spliceosome | 0.026402295 | GO:0000398 |
| RNA degradation | 0.035892792 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001687 | AT4G03120 (2.00E-22) | C2H2 and C2HC zinc fingers superfamily protein |
| CRO_T002316 | AT1G76630 (0) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T003906 | AT3G43920 (0) | ATDCL3|DICER-LIKE 3 |
| CRO_T009118 | AT1G03150 (1.00E-23) | Acyl-CoA N-acyltransferases (NAT) superfamily protein |
| CRO_T013302 | - | - |
| CRO_T018365 | AT3G60860 (3.00E-18) | SEC7-like guanine nucleotide exchange family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000253 | peptide-serine-N-acetyltransferase activity peptide-glutamate-N-acetyltransferase activity N-terminal peptidyl-glutamic acid acetylation internal protein amino acid acetylation N-terminal peptidyl-serine acetylation NatA complex Transcription_related, Transcription regulator: GNAT cytosolic ribosome | details |
| TissueCFM000326 | Ubiquitin_Proteasome_system, E3 adaptor: DWD protein targeting to peroxisome histone H3-K36 methylation histone H3-K4 methylation negative regulation of flower development 1-phosphatidylinositol-4-phosphate 5-kinase activity 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis phosphatidylinositol phosphorylation Cul4-RING E3 ubiquitin ligase complex spliceosomal complex mRNA splicing, via spliceosome Inositol phosphate metabolism Peroxisome RNA degradation | details |
| TissueCFM000405 | N-terminal peptidyl-serine acetylation N-terminal peptidyl-glutamic acid acetylation internal protein amino acid acetylation NatA complex peptide-serine-N-acetyltransferase activity peptide-glutamate-N-acetyltransferase activity Glucagon signaling pathway cytosolic ribosome Transcription_related, Transcription regulator: GNAT ATP-dependent helicase activity RNA degradation | details |
| TissueCFM000458 | peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity recognition of pollen Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) mRNA splicing, via spliceosome Spliceosome spliceosomal complex | details |
| TissueCFM000542 | Glucagon signaling pathway N-terminal peptidyl-serine acetylation N-terminal peptidyl-glutamic acid acetylation internal protein amino acid acetylation peptide-glutamate-N-acetyltransferase activity peptide-serine-N-acetyltransferase activity negative regulation of nucleic acid-templated transcription transcription corepressor activity NatA complex Transcription_related, Transcription regulator: GNAT cytosolic ribosome | details |
| TissueCFM000747 | peptide-serine-N-acetyltransferase activity NatB complex NatA complex peptide-glutamate-N-acetyltransferase activity N-terminal peptidyl-glutamic acid acetylation N-terminal peptidyl-serine acetylation internal protein amino acid acetylation N-terminal peptidyl-methionine acetylation DNA topoisomerase type I activity cellular component organization reproductive structure development DNA topological change Transcription_related, Transcription regulator: TRAF Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box Transcription_related, Transcription regulator: GNAT cytosolic ribosome single organism reproductive process peptide alpha-N-acetyltransferase activity post-embryonic development hydroquinone:oxygen oxidoreductase activity lignin catabolic process Ubiquitin_Proteasome_system, E3 adaptor: BTB Regulation of actin cytoskeleton single-organism cellular process Homologous recombination Ubiquitin mediated proteolysis | details |
| TissueCFM001061 | D-myo-inositol (1,4,5)-trisphosphate degradation peptide-serine-N-acetyltransferase activity peptide-glutamate-N-acetyltransferase activity internal protein amino acid acetylation N-terminal peptidyl-serine acetylation N-terminal peptidyl-glutamic acid acetylation NatA complex voltage-gated chloride channel activity Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family Transcription_related, Transcription regulator: GNAT phosphatidylinositol dephosphorylation chloride transport Wnt signaling pathway regulation of cell shape regulation of anion transmembrane transport cytosolic ribosome Endocytosis hyperosmotic salinity response ion transmembrane transport peptidyl-serine phosphorylation Protein processing in endoplasmic reticulum | details |
| TissueCFM001066 | N-terminal peptidyl-glutamic acid acetylation positive regulation of transcription from RNA polymerase I promoter internal protein amino acid acetylation N-terminal peptidyl-serine acetylation N-terminal peptidyl-methionine acetylation t-UTP complex NatB complex NatA complex peptide-glutamate-N-acetyltransferase activity peptide-serine-N-acetyltransferase activity cytosolic ribosome 90S preribosome Transcription_related, Transcription regulator: GNAT spliceosomal complex peptide alpha-N-acetyltransferase activity snoRNA binding hydroquinone:oxygen oxidoreductase activity lignin catabolic process Autophagy - yeast maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) mRNA splicing, via spliceosome small-subunit processome Ribosome biogenesis in eukaryotes | details |
| TissueCFM001067 | N-terminal peptidyl-glutamic acid acetylation internal protein amino acid acetylation N-terminal peptidyl-serine acetylation peptide-glutamate-N-acetyltransferase activity peptide-serine-N-acetyltransferase activity NatA complex cytosolic ribosome spliceosomal complex Transcription_related, Transcription regulator: GNAT mRNA splicing, via spliceosome Spliceosome | details |
| TissueCFM001085 | ceramide degradation Transcription_related, Transcription factor: BBR-BPC peptide-serine-N-acetyltransferase activity D-erythro-sphingosine kinase activity peptide-glutamate-N-acetyltransferase activity positive regulation of histone methylation N-terminal peptidyl-glutamic acid acetylation N-terminal peptidyl-serine acetylation internal protein amino acid acetylation NatA complex sphingolipid biosynthesis (plants) sphingolipid biosynthetic process regulation of RNA metabolic process Transcription_related, Transcription regulator: GNAT system development regulation of shoot system development cytosolic ribosome clathrin adaptor complex phospholipid-translocating ATPase activity phospholipid translocation regulation of gene expression Endocytosis plasma membrane response to stimulus single-organism cellular process protein transporter activity | details |
| TissueCFM001199 | D-myo-inositol (1,4,5)-trisphosphate degradation Transcription_related, Transcription factor: SBP Transcription_related, Transcription regulator: GNAT peptide-serine-N-acetyltransferase activity peptide-glutamate-N-acetyltransferase activity long-day photoperiodism N-terminal peptidyl-serine acetylation N-terminal peptidyl-glutamic acid acetylation stem cell fate determination internal protein amino acid acetylation meristem maintenance cellular calcium ion homeostasis nuclear-transcribed mRNA catabolic process, nonsense-mediated decay pollen maturation NatA complex sugar mediated signaling pathway phosphatidylinositol dephosphorylation cellular response to phosphate starvation pollen germination response to wounding nucleic acid metabolic process cellular macromolecule metabolic process cation transmembrane transport salicylic acid mediated signaling pathway jasmonic acid mediated signaling pathway cation-transporting ATPase activity | details |
| TissueCFM001209 | cytoskeleton-dependent intracellular transport regulation of microtubule-based process protein localization activation of GTPase activity regulation of vesicle fusion Rab GTPase binding ATP-dependent microtubule motor activity, plus-end-directed GTPase activator activity mRNA splicing, via spliceosome microtubule-based movement root development Spliceosome microtubule kinesin complex spliceosomal complex endomembrane system microtubule binding | details |
| TissueCFM001254 | ARF guanyl-nucleotide exchange factor activity regulation of ARF protein signal transduction positive regulation of GTPase activity formation of glycosidic bonds, GlycosylTransferases: GTnc UDP-glucosylation negative regulation of protein kinase activity attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation tetracyclic triterpenoid biosynthetic process meiotic sister chromatid cohesion, centromeric protein kinase inhibitor activity UDP-glucose:glycoprotein glucosyltransferase activity isoleucyl-tRNA aminoacylation cycloartenol synthase activity mangrove triterpenoid biosynthesis plant sterol biosynthesis II isoleucine-tRNA ligase activity double-stranded RNA binding carboxypeptidase activity aminoacyl-tRNA editing activity regulation of translational fidelity protein kinase binding plant sterol biosynthesis protein glycosylation | details |
| TissueCFM001296 | phosphatidic acid transporter activity photoreceptor activity phospholipid transport protein-tetrapyrrole linkage detection of visible light mitochondrial intermembrane space red, far-red light phototransduction phosphorelay sensor kinase activity spliceosomal complex Circadian rhythm - plant phosphorelay signal transduction system signal transduction by protein phosphorylation protein-chromophore linkage mRNA splicing, via spliceosome protein homodimerization activity | details |
| TissueCFM001371 | actin binding N-terminal peptidyl-glutamic acid acetylation internal protein amino acid acetylation N-terminal peptidyl-serine acetylation peptide-serine-N-acetyltransferase activity peptide-glutamate-N-acetyltransferase activity NatA complex phosphatidylinositol-mediated signaling cytoskeleton organization Transcription_related, Transcription regulator: GNAT Ubiquitin_Proteasome_system, DUB: USP 1-phosphatidylinositol 4-kinase activity DNA topoisomerase type I activity 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis motor activity myosin complex cytosolic ribosome spliceosomal complex phosphatidylinositol phosphorylation single-organism process mRNA splicing, via spliceosome Inositol phosphate metabolism | details |
| TissueCFM001448 | Protein processing in endoplasmic reticulum internal protein amino acid acetylation N-terminal peptidyl-glutamic acid acetylation N-terminal peptidyl-serine acetylation peptide-serine-N-acetyltransferase activity peptide-glutamate-N-acetyltransferase activity NatA complex Golgi apparatus part Transcription_related, Transcription regulator: GNAT Ubiquitin_Proteasome_system, E3 adaptor: Cullin intracellular transport cytosolic ribosome cullin-RING ubiquitin ligase complex COPII vesicle coat vacuolar transport mRNA surveillance pathway ER to Golgi vesicle-mediated transport protein ubiquitination involved in ubiquitin-dependent protein catabolic process vesicle-mediated transport | details |
| TissueCFM001451 | phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity peptide-serine-N-acetyltransferase activity peptide-glutamate-N-acetyltransferase activity Golgi apparatus recycling endosome NatA complex Rab guanyl-nucleotide exchange factor activity N-terminal peptidyl-serine acetylation N-terminal peptidyl-glutamic acid acetylation internal protein amino acid acetylation Transcription_related, Transcription regulator: GNAT NuA4 histone acetyltransferase complex 3-phosphoinositide biosynthesis phosphatidylinositol-3-phosphate biosynthetic process cytosolic ribosome cytoskeleton organization plant-type cell wall biogenesis hyperosmotic salinity response unidimensional cell growth positive regulation of GTPase activity protein serine/threonine phosphatase activity mRNA surveillance pathway | details |
| TissueCFM001484 | peptide-glutamate-N-acetyltransferase activity peptide-serine-N-acetyltransferase activity NatA complex N-terminal peptidyl-serine acetylation internal protein amino acid acetylation N-terminal peptidyl-glutamic acid acetylation Transcription_related, Transcription regulator: DDT protein monoubiquitination histone ubiquitination innate immune response HAUS complex cytosolic ribosome reproductive structure development spindle assembly Transcription_related, Transcription regulator: GNAT post-embryonic development single-organism cellular process Protein processing in endoplasmic reticulum | details |
| TissueCFM001510 | cellular response to stress positive regulation of kinase activity UDP-glucosylation glucan 1,4-alpha-maltotetraohydrolase activity UDP-glucose:glycoprotein glucosyltransferase activity regulation of translation formation of glycosidic bonds, GlycosylTransferases: GTnc alpha-amylase activity regulation of protein kinase activity Transcription_related, Transcription factor: BBR-BPC protein kinase regulator activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc protein kinase binding ribosome binding protein glycosylation Transcription_related, Transcription regulator: SNF2 RNA degradation | details |
| TissueCFM001601 | peptide-serine-N-acetyltransferase activity peptide-glutamate-N-acetyltransferase activity N-terminal peptidyl-glutamic acid acetylation internal protein amino acid acetylation N-terminal peptidyl-serine acetylation cellulose biosynthesis NatA complex Autophagy - yeast cytosolic ribosome spliceosomal complex plasma membrane zinc ion binding cellulose synthase (UDP-forming) activity recognition of pollen formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) Transcription_related, Transcription regulator: GNAT cellulose biosynthetic process mRNA splicing, via spliceosome Spliceosome | details |
| TissueCFM001673 | N-terminal peptidyl-serine acetylation N-terminal peptidyl-glutamic acid acetylation internal protein amino acid acetylation Transcription_related, Transcription regulator: GNAT long-day photoperiodism peptide-serine-N-acetyltransferase activity peptide-glutamate-N-acetyltransferase activity NatA complex nuclear-transcribed mRNA catabolic process, nonsense-mediated decay G-protein beta/gamma-subunit complex binding G-protein coupled receptor signaling pathway sugar mediated signaling pathway response to wounding salicylic acid mediated signaling pathway cytoplasmic mRNA processing body cytosolic ribosome spliceosomal complex jasmonic acid mediated signaling pathway mRNA splicing, via spliceosome defense response to bacterium signal transducer activity | details |
Expression profiles
 Show details about module gene expression profiling |