TreatCFM000249's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Antigen processing and presentation | 0.007687739 | KEGG pathway |
| ATPase activity, coupled to transmembrane movement of substances | 0.008658117 | GO:0042626 |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.014595708 | cazy family |
| Transcription_related, Transcription factor: NF-YB | 0.014595708 | TF family |
| organic substance transport | 0.019801874 | GO:0071702 |
| photosynthetic acclimation | 0.019801874 | GO:0009643 |
| regulation of vesicle fusion | 0.023739789 | GO:0031338 |
| single-organism transport | 0.023739789 | GO:0044765 |
| activation of GTPase activity | 0.023739789 | GO:0090630 |
| lipid transport | 0.026365076 | GO:0006869 |
| Transcription_related, Transcription factor: NAC | 0.035773846 | TF family |
| regulation of transcription, DNA-templated | 0.040325095 | GO:0006355 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001918 | AT1G04830 (1.00E-103) | Ypt/Rab-GAP domain of gyp1p superfamily protein |
| CRO_T002050 | AT2G13610 (9.00E-18) | ABCG5|ATP-binding cassette G5 |
| CRO_T003042 | AT3G15510 (3.00E-92) | ANAC056|Arabidopsis NAC domain containing protein 56; ATNAC2|NAC domain containing protein 2; NARS1|NAC-REGULATED SEED MORPHOLOGY 1 |
| CRO_T010102 | AT1G31740 (0) | BGAL15|beta-galactosidase 15 |
| CRO_T012057 | AT5G60750 (4.00E-85) | SCO4|snowy cotyledon 4 |
| CRO_T018224 | AT3G53340 (2.00E-63) | NF-YB10|nuclear factor Y, subunit B10 |
| CRO_T019651 | AT1G33090 (2.00E-147) | MATE efflux family protein |
| CRO_T027935 | AT3G09250 (3.00E-48) | Nuclear transport factor 2 (NTF2) family protein |
| CRO_T031766 | AT3G47760 (5.00E-20) | ABCA5|ATP-binding cassette A5; ATATH4|A. THALIANA ABC2 HOMOLOG 4; ATH4|ABC2 homolog 4 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000061 | ATPase activity, coupled to transmembrane movement of substances organic substance transport single-organism transport lipid transport hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III beta-galactosidase activity Transcription_related, Transcription factor: B3 | details |
| TreatCFM000161 | Oxidative phosphorylation mitochondrial inner membrane proton-transporting ATP synthase complex, catalytic core F(1) proton-transporting ATP synthase activity, rotational mechanism proton-transporting ATPase activity, rotational mechanism ATP hydrolysis coupled proton transport ATP synthesis coupled proton transport hydrogen ion transmembrane transport photosynthetic acclimation PPAR signaling pathway proton-transporting two-sector ATPase complex, catalytic domain ATPase activity, coupled to transmembrane movement of ions, rotational mechanism ATP biosynthetic process electron transport chain cation-transporting ATPase activity hydrogen ion transmembrane transporter activity cytochrome-c oxidase activity | details |
| TreatCFM000243 | DNA binding Transcription_related, Transcription regulator: HMG Transcription_related, Transcription factor: B3 | details |
| TreatCFM000256 | ent-kaurene biosynthesis I proanthocyanidins biosynthesis from flavanols leucopelargonidin and leucocyanidin biosynthesis Antigen processing and presentation Diterpenoid biosynthesis hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family Transcription_related, Transcription factor: MIKC Transcription_related, Transcription factor: NF-YB regulation of vesicle fusion activation of GTPase activity clathrin coat assembly | details |
| TreatCFM000259 | Oxidative phosphorylation ATP synthesis coupled proton transport proton-transporting ATPase activity, rotational mechanism hydrogen ion transmembrane transporter activity proton-transporting ATP synthase activity, rotational mechanism proton-transporting ATP synthase complex, catalytic core F(1) ATP hydrolysis coupled proton transport Progesterone-mediated oocyte maturation Protein_kinases_phosphatases, PPC:1.3.7: Receptor like protein kinase/Receptor lectin kinase like protein mitochondrion methyl indole-3-acetate esterase activity ketol-acid reductoisomerase activity photosynthetic acclimation indoleacetic acid conjugate metabolic process ATPase activity, coupled to transmembrane movement of ions, rotational mechanism valine biosynthetic process phosphatidylglycerol biosynthetic process CDP-diacylglycerol biosynthesis II L-valine biosynthesis methyl indole-3-acetate interconversion CDP-diacylglycerol biosynthetic process phosphatidate cytidylyltransferase activity | details |
| TreatCFM000327 | nucleoside metabolic process quercetin 7-O-glucosyltransferase activity quercetin 3-O-glucosyltransferase activity dTDP biosynthetic process flavonoid biosynthetic process dTTP biosynthetic process dUDP biosynthetic process flavonoid glucuronidation thymidylate kinase activity catalytic activity uridylate kinase activity apigeninidin 5-O-glucoside biosynthesis luteolinidin 5-O-glucoside biosynthesis Pyrimidine metabolism intracellular membrane-bounded organelle integral component of membrane pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) formation of glycosidic bonds, GlycosylTransferases: GTnc pyrimidine deoxyribonucleotides de novo biosynthesis I cytokinin-O-glucosides biosynthesis chloroplast outer membrane chloroplast organization | details |
| TreatCFM000511 | Protein_kinases_phosphatases, PPC:1.14.2: Receptor Like Cytoplasmic Kinase IX photosynthetic acclimation Plant-pathogen interaction regulation of membrane potential voltage-gated potassium channel activity potassium ion transmembrane transport response to stress peptidase activity | details |
| TreatCFM000795 | peptidase activity photosynthetic acclimation trans-lycopene biosynthesis II (plants) acetylglucosaminyltransferase activity Carotenoid biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
Expression profiles
 Show details about module gene expression profiling |